BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TF1409
(507 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|150010015|ref|YP_001304758.1| putative outer membrane pr... 560 e-158
gi|153806562|ref|ZP_01959230.1| hypothetical protein BACCAC... 550 e-155
gi|29346081|ref|NP_809584.1| outer membrane protein TolC, p... 547 e-154
gi|154493859|ref|ZP_02033179.1| hypothetical protein PARMER... 546 e-153
gi|150002667|ref|YP_001297411.1| putative outer membrane pr... 545 e-153
gi|156859337|gb|EDO52768.1| hypothetical protein BACUNI_035... 541 e-152
gi|53714437|ref|YP_100429.1| putative outer membrane protei... 530 e-148
gi|60682455|ref|YP_212599.1| putative ABC transport system,... 529 e-148
gi|154491993|ref|ZP_02031619.1| hypothetical protein PARMER... 256 2e-66
gi|53713658|ref|YP_099650.1| putative outer membrane protei... 254 8e-66
gi|153806347|ref|ZP_01959015.1| hypothetical protein BACCAC... 251 8e-65
gi|29346267|ref|NP_809770.1| outer membrane protein TolC, p... 251 9e-65
gi|126647294|ref|ZP_01719799.1| putative exported outer mem... 249 3e-64
gi|156110332|gb|EDO12077.1| hypothetical protein BACOVA_025... 248 9e-64
gi|86133908|ref|ZP_01052490.1| outer membrane protein TolC,... 246 2e-63
gi|124008600|ref|ZP_01693291.1| outer membrane protein TolC... 245 4e-63
gi|150005684|ref|YP_001300428.1| outer membrane protein Tol... 245 6e-63
gi|156108144|gb|EDO09889.1| hypothetical protein BACOVA_042... 243 3e-62
gi|88712073|ref|ZP_01106160.1| putative outer membrane prot... 240 1e-61
gi|154491002|ref|ZP_02030943.1| hypothetical protein PARMER... 239 2e-61
gi|29346940|ref|NP_810443.1| putative outer membrane protei... 239 3e-61
gi|156861504|gb|EDO54935.1| hypothetical protein BACUNI_014... 238 9e-61
gi|60280056|gb|AAX16396.1| outer membrane protein [uncultur... 236 2e-60
gi|149276413|ref|ZP_01882557.1| putative exported outer mem... 236 3e-60
gi|153808638|ref|ZP_01961306.1| hypothetical protein BACCAC... 233 2e-59
gi|156107743|gb|EDO09488.1| hypothetical protein BACOVA_053... 230 2e-58
gi|150004890|ref|YP_001299634.1| putative outer membrane pr... 228 8e-58
gi|150008564|ref|YP_001303307.1| outer membrane protein Tol... 227 1e-57
gi|53712807|ref|YP_098799.1| putative outer membrane protei... 222 5e-56
gi|34540126|ref|NP_904605.1| hypothetical protein PG0285 [P... 203 2e-50
gi|60680955|ref|YP_211099.1| putative outer membrane protei... 185 6e-45
gi|60679599|ref|YP_209743.1| putative outer membrane protei... 162 5e-38
gi|53711293|ref|YP_097285.1| putative outer membrane protei... 162 6e-38
gi|29345707|ref|NP_809210.1| putative outer membrane lipopr... 115 7e-24
gi|153807980|ref|ZP_01960648.1| hypothetical protein BACCAC... 108 1e-21
gi|154493332|ref|ZP_02032652.1| hypothetical protein PARMER... 103 3e-20
gi|153213363|ref|ZP_01948752.1| outer membrane protein TolC... 75 1e-11
gi|153803431|ref|ZP_01958017.1| outer membrane protein TolC... 74 3e-11
gi|147673121|ref|YP_001217116.1| putative outer membrane pr... 74 3e-11
gi|153830369|ref|ZP_01983036.1| putative outer membrane pro... 74 3e-11
gi|119116625|dbj|BAF40889.1| hypothetical protein [Vibrio c... 73 4e-11
gi|15641573|ref|NP_231205.1| outer membrane protein TolC, p... 73 4e-11
gi|116219118|ref|ZP_01484645.1| hypothetical protein VchoV5... 71 2e-10
gi|153824887|ref|ZP_01977554.1| outer membrane protein TolC... 69 7e-10
gi|149908116|ref|ZP_01896780.1| outer membrane protein TolC... 64 3e-08
gi|153818884|ref|ZP_01971551.1| outer membrane protein TolC... 60 3e-07
gi|83745824|ref|ZP_00942881.1| Type I secretion outer membr... 58 1e-06
gi|77459866|ref|YP_349373.1| RND efflux system, outer membr... 57 3e-06
gi|153837791|ref|ZP_01990458.1| TolC [Vibrio parahaemolytic... 57 3e-06
gi|91226914|ref|ZP_01261511.1| putative outer membrane prot... 56 5e-06
gi|116185526|ref|ZP_01475434.1| hypothetical protein VEx2w_... 56 6e-06
gi|72536042|gb|AAZ73116.1| TolC [Vibrio parahaemolyticus] 56 6e-06
>gi|150010015|ref|YP_001304758.1| putative outer membrane protein TolC [Parabacteroides distasonis
ATCC 8503]
gi|149938439|gb|ABR45136.1| putative outer membrane protein TolC [Parabacteroides distasonis
ATCC 8503]
Length = 497
Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats.
Identities = 280/488 (57%), Positives = 388/488 (79%), Gaps = 5/488 (1%)
Query: 18 TFAVL--LCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFR 75
TF VL C L +SAQ ++ L+L++T+ LA DSSL AFR KN++++ YWE+R+++
Sbjct: 8 TFLVLYAFCSLLAEGVSAQ---SLVLSLEKTISLAADSSLEAFRTKNLFLSGYWEFRNYK 64
Query: 76 ADRLPSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSI 135
A+RLPSL+L +TP Y T RYDS++DID YR+QQ+ + GNL KQNFD+ GG+F +
Sbjct: 65 AERLPSLTLNITPAEYYRDITKRYDSEKDIDEYRKQQSFYAGGNLKIKQNFDMLGGSFFV 124
Query: 136 HTGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLE 195
T LGY++ FG N +QF+S+P+ IGY+Q+L+GYN FRWE+KI PLK+EK +KEL+ +E
Sbjct: 125 DTDLGYMRYFGSNTYNQFTSVPIRIGYSQDLLGYNPFRWEKKIEPLKYEKVKKELLYNIE 184
Query: 196 ETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVN 255
+E A YFF LAMAQ EY++A+EN + T+ LYR G+E++KIA+I QA+L TLKLD +N
Sbjct: 185 TVSEQATTYFFSLAMAQVEYDMAKENVATTDTLYRTGQERHKIAAISQADLLTLKLDAIN 244
Query: 256 AQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRY 315
A+N+ QNA+I LKRAMF+LA+YLNFDKNTKI L+LP P I D AL AR+NNP++
Sbjct: 245 ARNTLQNADIALKRAMFSLASYLNFDKNTKIRLRLPSRPHDMDIPVDQALTLARENNPKF 304
Query: 316 LESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIP 375
LE ++++LE++Q++DKT+KE LFNA +ASIGFNQ+A F++VY+NP Q++ V +++SIP
Sbjct: 305 LEVRQEVLEAEQQVDKTKKETLFNASLNASIGFNQVATQFKEVYKNPLQQDLVSISISIP 364
Query: 376 LVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELA 435
L+DWGVRKG+YN+AKSNLN+ Q++A+Q E+ LEED+IMTVGDF +QQ +I SAEEA+++A
Sbjct: 365 LIDWGVRKGKYNIAKSNLNVTQISARQTEVTLEEDVIMTVGDFNVQQNLIASAEEALDIA 424
Query: 436 KVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKN 495
+AY +T++RF+IGKADI+SLTLS NR+QEAQRNYI AL+NYW SY+K+RKLTL DFE
Sbjct: 425 IMAYNETKQRFMIGKADINSLTLSLNRQQEAQRNYITALQNYWLSYYKIRKLTLHDFETG 484
Query: 496 RTIEIDFN 503
++ +F+
Sbjct: 485 ISLANEFD 492
>gi|153806562|ref|ZP_01959230.1| hypothetical protein BACCAC_00832 [Bacteroides caccae ATCC 43185]
gi|149131239|gb|EDM22445.1| hypothetical protein BACCAC_00832 [Bacteroides caccae ATCC 43185]
Length = 560
Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats.
Identities = 272/488 (55%), Positives = 377/488 (77%), Gaps = 3/488 (0%)
Query: 19 FAVLLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADR 78
F +L LCG L Q V L+L T+ LA DSSL +FR +NMY++ YWEYR+++A+R
Sbjct: 28 FLCILGVLCGESLLHAQKRLV-LDLNRTIALANDSSLESFRTQNMYLSGYWEYRTYKANR 86
Query: 79 LPSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTG 138
LPSL+L +TP Y T RYDS QD+D+YR QQ+ +YG LS +QN DLTGGTF + +
Sbjct: 87 LPSLTLALTPAQYNRDITKRYDSGQDLDVYRTQQSYYAYGGLSVRQNLDLTGGTFYLESN 146
Query: 139 LGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETA 198
L Y++NFG N +Q +S+P+ IGY+Q L+GYN F+WERKI PLK+E+ +KE + +E+ +
Sbjct: 147 LAYMRNFGDNSATQMTSVPIRIGYSQSLVGYNPFKWERKIEPLKYERVKKEFLYNVEKVS 206
Query: 199 EVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQN 258
E A YFF LAMAQAEY LA+EN ++T+ LYRIG+++++IA+I QA+L TLKLDRVNAQN
Sbjct: 207 ETATSYFFSLAMAQAEYNLAKENLASTDTLYRIGQQRHRIAAISQADLLTLKLDRVNAQN 266
Query: 259 SFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLES 318
+ QN LKRAMF+LA++LN DKNT+I L+LP P I D+AL R NNP+ LE
Sbjct: 267 TLQNKASDLKRAMFSLASFLNLDKNTQIELELPSRPGMLEIPIDEALRWGRSNNPQLLEL 326
Query: 319 KRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVD 378
K+ +LE+++ +DKT+KE+ FNA +ASIGFNQ+A+ F DVY P Q++ V +++SIPL+D
Sbjct: 327 KQNVLEAERNVDKTKKESRFNASVNASIGFNQVADNFGDVYHKPMQQDLVAVSVSIPLLD 386
Query: 379 WGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVA 438
WGVRKG+YNMA++NLN+V+++A+QDE+ +EE++IMTV DF +QQQ+I SAEEA++L+ +A
Sbjct: 387 WGVRKGKYNMARNNLNVVKISARQDEISIEEEVIMTVSDFNIQQQLIASAEEALDLSILA 446
Query: 439 YEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTI 498
Y +T++RFIIGKADI+SLTLS NR+Q+AQRN+I+AL+NYW +Y+K+R+LTLFDF ++
Sbjct: 447 YNETKQRFIIGKADINSLTLSLNRQQQAQRNFISALQNYWLNYYKIRRLTLFDFATKLSL 506
Query: 499 --EIDFNA 504
DFN
Sbjct: 507 SDRFDFNG 514
>gi|29346081|ref|NP_809584.1| outer membrane protein TolC, putative [Bacteroides thetaiotaomicron
VPI-5482]
gi|29337975|gb|AAO75778.1| outer membrane protein TolC, putative [Bacteroides thetaiotaomicron
VPI-5482]
Length = 499
Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats.
Identities = 271/498 (54%), Positives = 384/498 (77%), Gaps = 4/498 (0%)
Query: 11 IKKCGFITFAVLLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWE 70
+KK + + G+C + AQ+ + L+L +T+ LA DSSL +FR +NMY++ YWE
Sbjct: 1 MKKSSVLFVLMAASGICFSSVYAQK--RLVLDLNQTIALANDSSLESFRTQNMYLSGYWE 58
Query: 71 YRSFRADRLPSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTG 130
YR++RA+RLPSL++ +TP Y T RYDS QD+D+YR QQ+ +YG LS +QN DLTG
Sbjct: 59 YRTYRANRLPSLTMDLTPAQYNRDITKRYDSGQDLDVYRTQQSYYAYGGLSVRQNLDLTG 118
Query: 131 GTFSIHTGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKEL 190
GTF + + L Y++NFG N +QF+S+P+ +GY+Q L+GYN F+W+RKI PLK+E+ +KE
Sbjct: 119 GTFYLESNLAYMRNFGDNSATQFTSVPIRLGYSQSLVGYNPFKWDRKIEPLKYERVKKEF 178
Query: 191 IAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLK 250
+ +E+ +E A YFF LAMAQAEY+LA+EN ++T+ LYRIG+++++IA+I QA+L TLK
Sbjct: 179 LYNVEKVSETATNYFFSLAMAQAEYKLAKENLASTDTLYRIGQQRHRIAAISQADLLTLK 238
Query: 251 LDRVNAQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQ 310
LD+VNAQN+ QN LKRAMF+LA++LN DKNT+I L+LP P I D+AL R
Sbjct: 239 LDKVNAQNTLQNRASALKRAMFSLASFLNLDKNTQIELELPSRPSMMEIPVDEALRWGRS 298
Query: 311 NNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVEL 370
NNP+ LE K+ +LE+++ +D+T+KE+ FNA +ASIGFNQ+A F DVY P Q++ V +
Sbjct: 299 NNPQLLELKQNVLEAERNVDRTKKESRFNASVNASIGFNQVAENFGDVYHKPMQQDLVAV 358
Query: 371 TLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEE 430
++SIPL+DWGVRKG+YNMA++NLN+V+++A+QDE+ +EE++IMTV DF +QQQ+I SAEE
Sbjct: 359 SVSIPLLDWGVRKGKYNMARNNLNVVKISARQDEISIEEEVIMTVSDFNIQQQLIASAEE 418
Query: 431 AVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLF 490
A++LA +AY +T++RFIIGKADI+SLTLS NR+QEAQRNYI+AL+NYW +Y+K+R+LTLF
Sbjct: 419 ALDLAILAYNETRQRFIIGKADINSLTLSLNRQQEAQRNYISALQNYWLNYYKIRRLTLF 478
Query: 491 DFEKNRTI--EIDFNAIR 506
DF ++ DFN R
Sbjct: 479 DFATKLSLSDRFDFNGGR 496
>gi|154493859|ref|ZP_02033179.1| hypothetical protein PARMER_03202 [Parabacteroides merdae ATCC
43184]
gi|154086472|gb|EDN85517.1| hypothetical protein PARMER_03202 [Parabacteroides merdae ATCC
43184]
Length = 495
Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats.
Identities = 283/481 (58%), Positives = 376/481 (78%), Gaps = 4/481 (0%)
Query: 22 LLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPS 81
LL C F AQ +TL L+ T+ LA DSSL AFR KNMY+A YWEYR+++A RLPS
Sbjct: 13 LLMLACVFGGKAQ----LTLTLERTITLAADSSLDAFRYKNMYLAGYWEYRTYKAGRLPS 68
Query: 82 LSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGY 141
L+L +TP Y+ FT RYDS+ DID+YR+QQ+ + G L +QNFDL GGTF + T L Y
Sbjct: 69 LTLNLTPAQYRRYFTQRYDSEADIDVYRKQQSFYAGGQLEIEQNFDLLGGTFYLDTDLDY 128
Query: 142 IQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVA 201
++ FG +QFSS+P+ +GY Q+L+GYN F+WERKI PLK+EK +KEL+ +E+ +E A
Sbjct: 129 MRYFGDQTYNQFSSVPIRLGYQQDLLGYNAFKWERKIEPLKYEKVKKELLYNVEQMSEQA 188
Query: 202 AGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQ 261
YFF LAMAQ EY+LA+EN + T+ LYR G+E++KIASI QA+L TLKLD VNA+N+ +
Sbjct: 189 TTYFFALAMAQVEYDLAKENVATTDTLYRTGQERHKIASISQADLLTLKLDAVNARNTLK 248
Query: 262 NAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQ 321
NAEI LKRAMF+LA+YLNFDKNT+I L+LP P+ IS D AL AR NNP +LE ++Q
Sbjct: 249 NAEIALKRAMFSLASYLNFDKNTEIRLRLPSRPRNMEISVDKALELARANNPTFLELRQQ 308
Query: 322 LLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGV 381
+LE+QQ++DKT+KEA+FNA +AS+GFNQ++ +D Y+N Q+E V L++SIPLVDWGV
Sbjct: 309 ILEAQQQVDKTKKEAMFNAQINASVGFNQVSKNIQDAYKNLQQQEIVSLSVSIPLVDWGV 368
Query: 382 RKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQ 441
RKG++N+AK+NL + + +A+Q EL +EED+IMTVGDF +QQ +I SAEEAV+LA+ AY +
Sbjct: 369 RKGKHNIAKNNLLVTETSAKQKELTVEEDVIMTVGDFNIQQALIGSAEEAVDLAETAYSE 428
Query: 442 TQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEID 501
T++RF+IGKADI+SLTLS NR+QEAQRNYI+AL+NYW SY+K+RKLTL DFE ++ +
Sbjct: 429 TKQRFMIGKADINSLTLSLNRQQEAQRNYISALQNYWLSYYKIRKLTLHDFETGVSLSNE 488
Query: 502 F 502
F
Sbjct: 489 F 489
>gi|150002667|ref|YP_001297411.1| putative outer membrane protein TolC [Bacteroides vulgatus ATCC
8482]
gi|149931091|gb|ABR37789.1| putative outer membrane protein TolC [Bacteroides vulgatus ATCC
8482]
Length = 498
Score = 545 bits (1403), Expect = e-153, Method: Composition-based stats.
Identities = 272/495 (54%), Positives = 382/495 (77%), Gaps = 4/495 (0%)
Query: 11 IKKCGFITFAVLLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWE 70
+ K +I+ ++ C L AQQ V L+L+ T+ +A DSSLSAFR +N+Y++ YWE
Sbjct: 1 MTKMKYISIWMVGCMLLSLGAKAQQ--VVKLDLQRTIEIANDSSLSAFRYQNLYLSGYWE 58
Query: 71 YRSFRADRLPSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTG 130
YR+++A+RLPSL+L +TP Y T RYDS +D+D+YR QQ ++ G LS KQN D TG
Sbjct: 59 YRTYKANRLPSLTLDLTPAKYYRYITQRYDSNEDMDVYREQQMFSASGGLSIKQNLDWTG 118
Query: 131 GTFSIHTGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKEL 190
GTF I + L +++NFG ++ +Q+SSIPV +GY Q L+GYN FRW+RKI PLK+EK +K+
Sbjct: 119 GTFYIDSELDFMRNFGDSKSTQYSSIPVRVGYQQSLLGYNAFRWDRKIEPLKYEKVKKQF 178
Query: 191 IAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLK 250
I E +E A YFF LAMAQA+Y LAEEN ++++ LY IG +++KIA+I +A+L TL+
Sbjct: 179 IYNTEMVSEEAVTYFFALAMAQADYRLAEENVASSDTLYSIGLQRHKIAAISRADLLTLQ 238
Query: 251 LDRVNAQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQ 310
LD+VNA N+ QNA+I LKRAMF+LA++LN DKNT I L +P P I DDALM A++
Sbjct: 239 LDKVNAHNTLQNAQIALKRAMFSLASFLNLDKNTVIELDIPGRPTGKMIPVDDALMRAKE 298
Query: 311 NNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVEL 370
NNP +LE ++ +LE++Q +DKT+KE+ FNA F+AS+GFNQ+A+ D YR+P Q++ V +
Sbjct: 299 NNPTFLEQRQNVLEAEQNVDKTKKESRFNASFNASVGFNQVADKLGDAYRHPLQQDLVSV 358
Query: 371 TLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEE 430
++SIPL+DWGVRKG+YNMA++NLN+V++ A+Q+EL +EE++IMTV DF +QQ +I SAEE
Sbjct: 359 SVSIPLIDWGVRKGKYNMARNNLNVVRIAARQEELSVEEEVIMTVNDFNIQQSLIASAEE 418
Query: 431 AVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLF 490
A++LA +AYEQT++RFIIGKAD++SLTLS NR+QEAQ+NYI+AL+NYW +Y+K+RKLTL
Sbjct: 419 ALDLAVMAYEQTRQRFIIGKADVNSLTLSLNRQQEAQKNYISALQNYWLNYYKIRKLTLH 478
Query: 491 DFEKNRTI--EIDFN 503
DFE ++ + DFN
Sbjct: 479 DFESGFSLADKFDFN 493
>gi|156859337|gb|EDO52768.1| hypothetical protein BACUNI_03563 [Bacteroides uniformis ATCC 8492]
Length = 490
Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats.
Identities = 273/483 (56%), Positives = 377/483 (78%), Gaps = 2/483 (0%)
Query: 21 VLLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLP 80
+LL L AQQ +TL+L++T+ LA DSSL AFR KNMY+A YWEYR+++A+RLP
Sbjct: 7 ILLFSLGALSAFAQQ--RITLDLQQTIALANDSSLEAFRTKNMYLAGYWEYRTYKANRLP 64
Query: 81 SLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLG 140
SL+L MTP Y T RYDS+QD+DIYR QQ+ +YGNL+ +QNFDLTGGTF + T LG
Sbjct: 65 SLTLNMTPAQYNRDITKRYDSEQDLDIYRSQQSFYAYGNLAVRQNFDLTGGTFYLDTELG 124
Query: 141 YIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEV 200
Y+++FG N+ +QF+S+PV +GY+Q L+GYN FRWER+I PLK+EK +KE I E +E
Sbjct: 125 YMRSFGGNKYTQFTSVPVRLGYSQSLVGYNPFRWERRIEPLKYEKVKKEYIYNAERVSEQ 184
Query: 201 AAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSF 260
A YFF LAMAQAEY+LA++N +T+ LYRIG ++ KIA+I +A+L TLKLD VNA+N+
Sbjct: 185 ATTYFFALAMAQAEYDLAKDNAVSTDTLYRIGMQRLKIAAISRADLLTLKLDVVNARNTL 244
Query: 261 QNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKR 320
QNA LKRAMF+LA++LN +KNT I + LP P+ I D+AL+ A+ NNP +L ++
Sbjct: 245 QNAASALKRAMFSLASFLNMEKNTDIRVSLPGRPRALTIPVDEALLAAQANNPEFLGLRQ 304
Query: 321 QLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWG 380
++LE++Q +DKT+KE+ FNA +AS+GFNQ+A F + YR+P Q+E V +++SIPLVDWG
Sbjct: 305 EVLEAEQTVDKTKKESRFNASINASVGFNQVAEKFGEAYRHPMQQEMVSVSVSIPLVDWG 364
Query: 381 VRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYE 440
VRKG+YNMA++NLN+V+ +A+Q E+ +EE++IMTV DF +QQ ++ SAEEA++LA +AY
Sbjct: 365 VRKGKYNMARNNLNVVKTSARQSEISIEEEVIMTVSDFNVQQALVASAEEALDLAILAYN 424
Query: 441 QTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEI 500
+T++RFIIGKADI+SLTLS NR+QEAQRNYI+AL++YW +Y+K+RKLTL DF ++
Sbjct: 425 ETRQRFIIGKADINSLTLSLNRQQEAQRNYISALQDYWLNYYKIRKLTLHDFASGFSLSE 484
Query: 501 DFN 503
F+
Sbjct: 485 KFD 487
>gi|53714437|ref|YP_100429.1| putative outer membrane protein TolC [Bacteroides fragilis YCH46]
gi|52217302|dbj|BAD49895.1| putative outer membrane protein TolC [Bacteroides fragilis YCH46]
Length = 497
Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats.
Identities = 266/493 (53%), Positives = 375/493 (76%), Gaps = 4/493 (0%)
Query: 11 IKKCGFITFAVLLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWE 70
+KK +I A LL G A+ + L+L++T++LA DSSL AFR +NMY++ YWE
Sbjct: 1 MKKRYYIVIAALLFGAS----VAKAQDHIKLDLQKTIQLANDSSLEAFRTQNMYLSGYWE 56
Query: 71 YRSFRADRLPSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTG 130
YR+++A+RLPSL+L MTP Y T RYDS++D+D+YR QQ+ + GNL+ +QNFDLTG
Sbjct: 57 YRTYKANRLPSLTLNMTPAEYNRDITKRYDSEKDLDVYRSQQSFYASGNLAIQQNFDLTG 116
Query: 131 GTFSIHTGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKEL 190
GTF + + LGY+++FG N+ +QF+S+P+ +GY+Q L+GYN F+WERKI PLK+EK +KE
Sbjct: 117 GTFYLQSQLGYMRSFGGNKTTQFTSVPIRLGYSQSLVGYNSFKWERKIEPLKYEKVKKEF 176
Query: 191 IAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLK 250
+ +E + A YFF+LAMAQAEY LA+EN +++ LY IG ++ KIA+I +A+L TLK
Sbjct: 177 VYNVEAVSVQATTYFFNLAMAQAEYNLAKENMVSSDTLYSIGVQRQKIAAISKADLLTLK 236
Query: 251 LDRVNAQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQ 310
LD VNA+N+ QN LKRAMF+L ++LN DKNT I + LP P+ I D AL A +
Sbjct: 237 LDVVNARNTLQNKASALKRAMFSLVSFLNLDKNTVIDIDLPVRPQELVIPVDKALQMAHE 296
Query: 311 NNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVEL 370
NNP+ L K+ +LE+++ +DKT+KE+ FNA +ASIGFNQ+A+ F DVY P Q++ V +
Sbjct: 297 NNPQLLGLKQNVLEAERNVDKTKKESRFNASVNASIGFNQVADNFGDVYHKPMQQDLVSV 356
Query: 371 TLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEE 430
++SIPLVDWGVRKG+YNMA++NLN+V+ +A+QDE+ L+E++IMTV DF +QQ MI SAEE
Sbjct: 357 SVSIPLVDWGVRKGKYNMARNNLNVVKTSARQDEISLDEEVIMTVNDFNIQQNMITSAEE 416
Query: 431 AVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLF 490
A++L+ +AY +T++RFIIGKADI+SLTLS NR+QEAQ+NYI+AL+NYW +Y+K+RKLTL
Sbjct: 417 ALDLSILAYNETRQRFIIGKADINSLTLSLNRQQEAQQNYISALQNYWLNYYKIRKLTLH 476
Query: 491 DFEKNRTIEIDFN 503
DF ++ F+
Sbjct: 477 DFATGISLTDKFD 489
>gi|60682455|ref|YP_212599.1| putative ABC transport system, exported protein [Bacteroides
fragilis NCTC 9343]
gi|60493889|emb|CAH08680.1| putative ABC transport system, exported protein [Bacteroides
fragilis NCTC 9343]
Length = 497
Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats.
Identities = 265/493 (53%), Positives = 374/493 (75%), Gaps = 4/493 (0%)
Query: 11 IKKCGFITFAVLLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWE 70
+KK +I A LL G A+ + L+L++T++LA DSSL AFR +NMY++ YWE
Sbjct: 1 MKKRYYIVIAALLFGAS----VAKAQDHIKLDLQKTIQLANDSSLEAFRTQNMYLSGYWE 56
Query: 71 YRSFRADRLPSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTG 130
YR+++A+RLPSL+L MTP Y T RYDS++D+D+YR QQ+ + GNL+ +QNFDLTG
Sbjct: 57 YRTYKANRLPSLTLNMTPAEYNRDITKRYDSEKDLDVYRSQQSFYASGNLAIQQNFDLTG 116
Query: 131 GTFSIHTGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKEL 190
GTF + + LGY+++FG N+ +QF+S+P+ +GY+Q L+GYN F+WERKI PLK+EK +KE
Sbjct: 117 GTFYLQSQLGYMRSFGGNKTTQFTSVPIRLGYSQSLVGYNSFKWERKIEPLKYEKVKKEF 176
Query: 191 IAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLK 250
+ +E + A YFF+LAMAQAEY LA+EN +++ LY IG ++ KIA+I +A+L TLK
Sbjct: 177 VYNVEAVSVQATTYFFNLAMAQAEYNLAKENMVSSDTLYSIGVQRQKIAAISKADLLTLK 236
Query: 251 LDRVNAQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQ 310
LD VNA+N+ QN LKRAMF+L ++LN DKNT I + LP P+ I D AL A +
Sbjct: 237 LDVVNARNTLQNKASALKRAMFSLVSFLNLDKNTVIDIDLPVRPQELVIPVDKALQMAHE 296
Query: 311 NNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVEL 370
NNP+ L K+ +LE+++ +DKT+KE+ FNA +A IGFNQ+A+ F DVY P Q++ V +
Sbjct: 297 NNPQLLGLKQNVLEAERNVDKTKKESRFNASVNACIGFNQVADNFGDVYHKPMQQDLVSV 356
Query: 371 TLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEE 430
++SIPLVDWGVRKG+YNMA++NLN+V+ +A+QDE+ L+E++IMTV DF +QQ MI SAEE
Sbjct: 357 SVSIPLVDWGVRKGKYNMARNNLNVVKTSARQDEISLDEEVIMTVNDFNIQQNMITSAEE 416
Query: 431 AVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLF 490
A++L+ +AY +T++RFIIGKADI+SLTLS NR+QEAQ+NYI+AL+NYW +Y+K+RKLTL
Sbjct: 417 ALDLSILAYNETRQRFIIGKADINSLTLSLNRQQEAQQNYISALQNYWLNYYKIRKLTLH 476
Query: 491 DFEKNRTIEIDFN 503
DF ++ F+
Sbjct: 477 DFATGISLTDKFD 489
>gi|154491993|ref|ZP_02031619.1| hypothetical protein PARMER_01624 [Parabacteroides merdae ATCC
43184]
gi|154088234|gb|EDN87279.1| hypothetical protein PARMER_01624 [Parabacteroides merdae ATCC
43184]
Length = 489
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 155/472 (32%), Positives = 253/472 (53%), Gaps = 3/472 (0%)
Query: 31 LSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTPLS 90
L Q T+TL L E + +A +S A A++ + A+YW +RSFRA +LPSL+L P
Sbjct: 15 LQLQAQKTLTLTLSEAIEMARRNSPEAIAARHAFRASYWNWRSFRAKQLPSLTLTSDPSL 74
Query: 91 YKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEK 150
+ + + D ++R Q L+ +L +QN LTGG + TGL + F N
Sbjct: 75 NRSIQSVTLEDGSDKFVHRNQ--LSVDASLEIQQNIALTGGKVLLKTGLERLDMFTDN-I 131
Query: 151 SQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAM 210
S + S PV +GY Q+L G+N +WER+I P+K+E+A+K I LE A FF+LA
Sbjct: 132 SSYKSTPVVVGYEQDLFGFNDLKWERRIEPIKYEEAKKTYIETLELVAAYTTNRFFNLAT 191
Query: 211 AQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRA 270
AQ E+A N + + LYR + +Y I +I + E+ L+L+++ Q + NA+I +
Sbjct: 192 AQTSLEIANYNFAYADTLYRYAQGRYNIGTITENEMLQLELNKLTEQTNCLNAQIEVDDY 251
Query: 271 MFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQKLD 330
+ +L +YL +N + + D F + ++A+ A QNNP +R+ L+S+ +
Sbjct: 252 IQSLRSYLGISENINLVVIPDDSIPHFTVDVNEAMQLAFQNNPDISAFERRRLQSESNVA 311
Query: 331 KTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAK 390
+ + F A A G Q ++ YR+P ++ V L + IP++DWGV KG+ +AK
Sbjct: 312 EAKANRGFKAALYAQFGLTQSNEKLKESYRDPMDQQLVTLGIRIPILDWGVGKGRVKVAK 371
Query: 391 SNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGK 450
SN + V +Q+ + E ++ V F +Q + A + + A+ + + +++GK
Sbjct: 372 SNRDKVYTELEQERMDFELNVAKIVKQFNIQAGKVAIAYKTDQTAQRRNDVARRLYLLGK 431
Query: 451 ADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDF 502
+ I L + + ++R YIAAL NYW Y+ LR LT +DFEK I D+
Sbjct: 432 STILDLNAAIAEKDNSRRAYIAALYNYWNLYYGLRSLTGYDFEKMIPITEDY 483
>gi|53713658|ref|YP_099650.1| putative outer membrane protein TolC [Bacteroides fragilis YCH46]
gi|60681931|ref|YP_212075.1| putative exported outer membrane protein [Bacteroides fragilis NCTC
9343]
gi|52216523|dbj|BAD49116.1| putative outer membrane protein TolC [Bacteroides fragilis YCH46]
gi|60493365|emb|CAH08151.1| putative exported outer membrane protein [Bacteroides fragilis NCTC
9343]
Length = 490
Score = 254 bits (650), Expect = 8e-66, Method: Composition-based stats.
Identities = 150/474 (31%), Positives = 255/474 (53%), Gaps = 4/474 (0%)
Query: 21 VLLCGLCGFRLSAQ-QPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRL 79
+L+ C + A Q T+ L+L ETV+LA S A A++ + + YW Y+ +RA+ L
Sbjct: 6 ILIIAGCSYIFPATAQERTMELSLDETVKLAKLQSPDAQTARHSFRSAYWNYKYYRANYL 65
Query: 80 PSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGL 139
P+LSL P + N+ + Q L++ L+ QN TGG+ + T
Sbjct: 66 PALSLTSDP--NLNRAINKVTLGDGTVKFVEQNMLSTDLTLNLTQNIPWTGGSLFVETAA 123
Query: 140 GYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAE 199
+ F + + + + P++IGY Q L GYN +W+R+I P+++ +A+K + LE A
Sbjct: 124 QRMDIF-SDHTTAWQTSPINIGYRQSLFGYNSLKWDRRIEPVRYREAKKSYVETLELVAT 182
Query: 200 VAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNS 259
A FF+LA AQ+ YE A N +N + LY+ + +Y I +I + E+ L+L+++ + +
Sbjct: 183 RATQKFFNLATAQSNYETATTNYANADTLYQYAQGRYNIGTITENEMLQLELNKLTEETN 242
Query: 260 FQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESK 319
NA I + M L +YL + ++ +++ D+ F++ +AL+ A +N+P
Sbjct: 243 RMNARIEMDNCMQELRSYLGIQSDEELKVKINDHVPDFSVELHEALLLANENSPEIQNMI 302
Query: 320 RQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDW 379
R+ LES+ + R A A G Q A+ Y+ P +++V L++++P++DW
Sbjct: 303 RRKLESESNVSYARANAGLKADIYLRFGLTQTADKLGSAYKRPLDQQYVSLSVALPILDW 362
Query: 380 GVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAY 439
G KG+ +A+SN ++V +QD+ E +I V F +Q Q +R A E A+
Sbjct: 363 GRGKGKVRVARSNRDLVYTQVEQDKTDFELNIRKLVKQFNLQAQRVRIAARTDETAQRRS 422
Query: 440 EQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFE 493
+ ++ +++GK+ I L S + +A+RNYI AL NYW Y+ LR LTLFDFE
Sbjct: 423 DVARKLYLLGKSTILDLNASITEKDQARRNYITALYNYWSLYYTLRSLTLFDFE 476
>gi|153806347|ref|ZP_01959015.1| hypothetical protein BACCAC_00606 [Bacteroides caccae ATCC 43185]
gi|149131024|gb|EDM22230.1| hypothetical protein BACCAC_00606 [Bacteroides caccae ATCC 43185]
Length = 490
Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats.
Identities = 152/481 (31%), Positives = 262/481 (54%), Gaps = 3/481 (0%)
Query: 25 GLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSL 84
G+ L A Q T L+L++ V++A S A A++ + + YW Y+ +RA+ LP+L+L
Sbjct: 11 GILATELLAAQDQTTELSLEQVVKIARLESPDAQTARHSFRSAYWNYKYYRANYLPTLNL 70
Query: 85 GMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQN 144
P + N+ + Q L + L+ QN TGG+ + T +
Sbjct: 71 TSDP--NLNRAINKITMGDGSVKFVEQNLLNTDLTLNLSQNIPWTGGSLFLETSAQRMDL 128
Query: 145 FGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGY 204
F +++ S +S P+ IGY Q L GYN +W+++I P+++++A+K + LE + A
Sbjct: 129 FSEHKYSWQTS-PIMIGYRQSLFGYNSLKWDKRIEPVRYQEAKKSYVETLELVSANAINK 187
Query: 205 FFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAE 264
FF LA AQ+ Y++A N +N + LYR + +Y I +I + E+ L+L+R+ + + NA
Sbjct: 188 FFALATAQSNYDIASFNYANADTLYRYAQGRYNIGTITENEMLQLELNRLTEETNRMNAR 247
Query: 265 IRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLE 324
I + M L +YL + +I +++ F+I+ ++AL A +N+P KR+ LE
Sbjct: 248 IEMDNCMQELRSYLGIQEEREIRVRVSSRIPDFSINLNEALALAYENSPDIQTMKRRKLE 307
Query: 325 SQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKG 384
S+ + + R A A G Q A+ + YRN +++V L++S+P++DWG KG
Sbjct: 308 SESAVARARANAGLKADIYLRFGLTQTADKLPEAYRNLLDQQYVSLSISLPILDWGRGKG 367
Query: 385 QYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQE 444
Q +A+SN ++V +Q+ E ++ V F +Q Q +R A E A+ E ++
Sbjct: 368 QVRVARSNRDLVYTQVEQNRTDFELNVRKLVKQFNLQTQRVRIAARTDETAQRRNEVARK 427
Query: 445 RFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNA 504
+I+GK+ I L S + + A+RNY++AL NYW Y+ LR +TL+DFE N+ + D+N
Sbjct: 428 LYILGKSTILDLNASISEKDSARRNYVSALYNYWSLYYTLRSMTLYDFESNKLLTEDYNL 487
Query: 505 I 505
+
Sbjct: 488 L 488
>gi|29346267|ref|NP_809770.1| outer membrane protein TolC, putative [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338162|gb|AAO75964.1| outer membrane protein TolC, putative [Bacteroides thetaiotaomicron
VPI-5482]
Length = 490
Score = 251 bits (641), Expect = 9e-65, Method: Composition-based stats.
Identities = 152/481 (31%), Positives = 261/481 (54%), Gaps = 3/481 (0%)
Query: 25 GLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSL 84
G+ L A Q T+ ++L++ V++A S A A++ + + YW Y+ +RA+ LPSLSL
Sbjct: 11 GILSTELLAAQNQTMEMSLEQVVKIARLESPDARTARHSFRSAYWNYKYYRANYLPSLSL 70
Query: 85 GMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQN 144
P + N+ + Q L + L+ QN TGG+ + T +
Sbjct: 71 SSDP--NLNRAINKITMGDGSVKFVEQNLLNTDLTLNLSQNIPWTGGSLFLETSAQRMDL 128
Query: 145 FGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGY 204
F +++ S +S PV IGY Q L GYN +W+++I P+++++A+K + LE + A
Sbjct: 129 FSEHKYSWQTS-PVMIGYRQSLFGYNSLKWDKRIEPVRYQEAKKSYVETLELVSANAINK 187
Query: 205 FFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAE 264
FF LA AQ+ Y++A N +N + LYR + +Y I +I + E+ L+L+R+ + + NA
Sbjct: 188 FFALATAQSNYDIASFNYANADTLYRYAQGRYNIGTITENEMLQLELNRLTEETNRMNAR 247
Query: 265 IRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLE 324
I + M L +YL ++ ++ +++ F+++ D+AL A +N+P KR+ LE
Sbjct: 248 IEMDNCMQELRSYLGIQEDRELRVRINSQVPDFSVNLDEALALAYENSPDIQAMKRRKLE 307
Query: 325 SQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKG 384
S+ + + R A A G Q A D YRN +++V L++++P++DWG KG
Sbjct: 308 SESAVARARANAGLKADIYLRFGLTQTAEKLPDAYRNLLDQQYVSLSIALPILDWGRGKG 367
Query: 385 QYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQE 444
Q +A+SN ++V +Q+ E ++ V F +Q Q + A E A+ E ++
Sbjct: 368 QVRVARSNRDLVYTQVEQNRTDFELNVRKLVKQFNLQTQRVHIAARTDETAQRRNEVARK 427
Query: 445 RFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNA 504
+I+GK+ I L S + A+RNY++AL NYW Y+ LR +TL+DFE+N + D+N
Sbjct: 428 LYILGKSTILDLNASIAEKDSARRNYVSALYNYWSLYYTLRSMTLYDFERNMLLTEDYNL 487
Query: 505 I 505
+
Sbjct: 488 L 488
>gi|126647294|ref|ZP_01719799.1| putative exported outer membrane protein [Algoriphagus sp. PR1]
gi|126575970|gb|EAZ80248.1| putative exported outer membrane protein [Algoriphagus sp. PR1]
Length = 497
Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats.
Identities = 144/487 (29%), Positives = 270/487 (55%), Gaps = 6/487 (1%)
Query: 17 ITFAVLLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRA 76
+ ++LL G F + Q +V+ L+E V+ A D S ++ RAK YW+YR F++
Sbjct: 10 LAVSILLLGSSVFTETCAQ-DSVSYTLQEMVQRAKDRSPASLRAKTARENRYWQYRQFKS 68
Query: 77 DRLPSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIH 136
+ P L L T +Y +F N I+ +Q L G L +Q TGG SI+
Sbjct: 69 NYNPQLRLTGTIPAYSQAFNNVTQPDGTIEFRPVKQNLVDLG-LGLQQVISPTGGMVSIN 127
Query: 137 TGLGYIQNF--GKNE-KSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQ 193
T NF G NE ++++S IP+++ +Q + YN ++W++KI PL FE++++E + +
Sbjct: 128 TSTSRFDNFLAGDNEIQTRWSGIPMNVSLDQPIFAYNPYKWDKKIMPLLFEESKREFVEE 187
Query: 194 LEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDR 253
E+ + + FF+ +AQ +E+A +N NTE+++ I +++Y + + + EL ++L
Sbjct: 188 SEQISMMVTELFFNYLIAQVNFEIATQNLKNTEQIFGIEQKRYDLGATFEDELLQVELQT 247
Query: 254 VNAQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNP 313
+ A+ A++ L+ + A+ +++ ++ I L P F + ++A+ +A QN
Sbjct: 248 LQAKQDLAKAKLDLESSSLAVNSFIGLNQAANILLIPPSEVPEFDVDVNEAIEYAFQNRS 307
Query: 314 RYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLS 373
L RQL+E++ + + + + + AS G+N A T D+Y+NP+ + V L +S
Sbjct: 308 EALGFDRQLIEAEATVAEAKGQRM-QMNLRASYGYNNAAFTLSDIYQNPNTQALVNLGIS 366
Query: 374 IPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVE 433
+P++DWG K + ++AK+N V+ T +Q+ + E++I V +F M ++ I ++ E
Sbjct: 367 VPILDWGRNKSRMSIAKANQQFVEYTVEQETINFEQEIFTKVRNFLMIRERINVTRKSDE 426
Query: 434 LAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFE 493
+A+ Y+ R+ G ++ L ++ ++ + +R Y +LK YW +YF+LR LTL+DFE
Sbjct: 427 VAEKRYQIALNRYQTGNVTVTDLNIAQGQKDDNKRAYYNSLKEYWMAYFELRALTLYDFE 486
Query: 494 KNRTIEI 500
++ + I
Sbjct: 487 NDQLLYI 493
>gi|156110332|gb|EDO12077.1| hypothetical protein BACOVA_02582 [Bacteroides ovatus ATCC 8483]
Length = 499
Score = 248 bits (632), Expect = 9e-64, Method: Composition-based stats.
Identities = 150/471 (31%), Positives = 257/471 (54%), Gaps = 3/471 (0%)
Query: 35 QPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTPLSYKHS 94
Q T L+LK+ + +A S A A++ + + YW Y+ +RA+ LPSLSL P +
Sbjct: 30 QDQTTELSLKQVIEIARMESPDAQTARHSFRSAYWNYKYYRANYLPSLSLTSDP--NLNR 87
Query: 95 FTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEKSQFS 154
N+ + Q L + L+ QN TGG+F + T + F +++ S +
Sbjct: 88 AINKITMGDGSVKFVEQNLLNTDLTLNLSQNLSWTGGSFFLETSAQRMDLFSEHKYSWQT 147
Query: 155 SIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAMAQAE 214
S P+ IGY Q L GYN +W+R+I P+++++A+K + LE + A FF LA AQ++
Sbjct: 148 S-PIMIGYRQSLFGYNSLKWDRRIEPVRYQEAKKSYVETLELVSANAINKFFALATAQSD 206
Query: 215 YELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAMFAL 274
Y++A N +N + LYR + +Y I +I + E+ L+L+R+ + + NA I + M L
Sbjct: 207 YDIASFNYANADTLYRYAQGRYNIGTITENEMLQLELNRLTEETNRMNALIEMDNCMQEL 266
Query: 275 AAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQKLDKTRK 334
+YL ++ ++ + + F+++ ++AL A +N+P +R+ LES+ + K R
Sbjct: 267 RSYLGIHEDRELRVLVSPQIPDFSVNLNEALALAYENSPDIQTMERRKLESESAVAKARA 326
Query: 335 EALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAKSNLN 394
A A G Q A+ D YRN +++V + +S+P++DWG KGQ +A+SN +
Sbjct: 327 NAGLKADIYLRFGLTQTADKLPDAYRNLLDQQYVSIGISLPILDWGRGKGQVRVARSNRD 386
Query: 395 IVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGKADIS 454
+V +Q E ++ V F +Q Q +R A E A+ E ++ +++GK+ I
Sbjct: 387 LVYTQVEQSRTDFELNVRKLVKQFNLQTQRVRIAARTDETAQRRSEVARKLYLLGKSTIL 446
Query: 455 SLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNAI 505
L S + + A+RNYI+AL NYW Y+ LR +TL+DFE+N + D++ +
Sbjct: 447 DLNASISEKDSARRNYISALYNYWSLYYTLRSMTLYDFERNTILTEDYHLL 497
>gi|86133908|ref|ZP_01052490.1| outer membrane protein TolC, putative [Tenacibaculum sp. MED152]
gi|85820771|gb|EAQ41918.1| outer membrane protein TolC, putative [Polaribacter dokdonensis
MED152]
Length = 485
Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 149/473 (31%), Positives = 265/473 (56%), Gaps = 2/473 (0%)
Query: 29 FRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTP 88
F LS G + L++ + +A +S N A+YW YR+++A LP L L T
Sbjct: 10 FALSFAAYGQQEITLEQAISIAQKNSPDYKALLNQNQASYWRYRNYQAGFLPQLRLDATL 69
Query: 89 LSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKN 148
Y +S NR + DI+ R + G LS QN LTGGT S+ + L + FG N
Sbjct: 70 PRYSNS-VNRLTNDNGQDIFVRSNQASFDGALSLNQNIALTGGTISVSSQLERVDVFGDN 128
Query: 149 EKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDL 208
+ FS IP S+ Y+Q + YN F+W+++I PL +E+A++E I ++EE + + +F L
Sbjct: 129 ASTGFSVIPFSLNYSQNSLFYNPFKWQKRIEPLIYEEAKREFIERMEEISSNTSRRYFAL 188
Query: 209 AMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLK 268
AQ + +A+ N SN + L++I + ++K+ I + +L ++L +N++N EI K
Sbjct: 189 LKAQIQSRIAKSNLSNQDTLFQISKGRFKMGKIAENDLLQIELSVLNSENEVITNEINFK 248
Query: 269 RAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQK 328
R+ L+ YL D I L P TF +S + AL AR N +E +R+ L+++Q
Sbjct: 249 RSSQNLSRYLVLDTEN-IILSTPKELTTFTVSVEKALEEARANRKAVIEFRRRRLQAEQD 307
Query: 329 LDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNM 388
+ + + F A+ G +Q F D++++ +Q++ V L++ +P++DWGV K + +
Sbjct: 308 VAEVKGNNRLQMSFRANFGISQQGAVFNDLFQDFNQQQNVVLSIGVPILDWGVSKSRRKL 367
Query: 389 AKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFII 448
++N ++V + +E E++I + V ++ Q+ +++A++A E+A YE ++RF++
Sbjct: 368 VEANQDLVNTNIEIEEQEFEQEIYLHVLNWQNQRNFLKTAKKAQEIALKRYEIAKKRFVL 427
Query: 449 GKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEID 501
GK I+ L ++ + + Y+ +L+ +W Y+ LR+LTL+DF KN I++D
Sbjct: 428 GKIGITDLNIALQEQDRSVLQYLNSLEKFWTDYYTLRRLTLYDFIKNEKIKVD 480
>gi|124008600|ref|ZP_01693291.1| outer membrane protein TolC, putative [Microscilla marina ATCC
23134]
gi|123985844|gb|EAY25708.1| outer membrane protein TolC, putative [Microscilla marina ATCC
23134]
Length = 509
Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats.
Identities = 145/478 (30%), Positives = 255/478 (53%), Gaps = 2/478 (0%)
Query: 22 LLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPS 81
L C L + Q +L+E + ++ S + +A N YW YR+F +D P
Sbjct: 26 LCCLLLSSVVYGQTEKKQKYSLQEIITISKKQSPISLQAINRKENFYWRYRTFLSDYKPQ 85
Query: 82 LSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGY 141
LSL +Y S R D++ + + + NLS +Q TGG + + L
Sbjct: 86 LSLSGNLPNYNKSI-ERITLDDGSDVFIDRGLVNTDVNLSLRQKIGFTGGEVFLSSELAR 144
Query: 142 IQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVA 201
I G N + F S PVSIG++Q L GYN +W +KI PL++ ++QK ++E A
Sbjct: 145 IDLLGNNNGTSFLSTPVSIGFSQPLFGYNELKWNKKIEPLRYSESQKAYSEEMEGIAVQT 204
Query: 202 AGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQ 261
FFDL +AQ +++E N++N + +Y+IG+ +Y + I + EL L+L + +
Sbjct: 205 TDLFFDLLVAQITLKISELNQANNDTIYKIGQGRYNVGKIAENELLQLQLASMESDQRVT 264
Query: 262 NAEIRLKRAMFALAAYLNFDKNTK-ITLQLPDYPKTFAISTDDALMHARQNNPRYLESKR 320
A++ ++ + L +L ++ K I L P I + AL A++N ++++ KR
Sbjct: 265 QAKMDIETSELRLKIFLGNNEGLKNIELIEPLNVPEIEIDEETALAEAKKNRAKFVQFKR 324
Query: 321 QLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWG 380
Q LE+++ + + R + N + S GF + A F +VY+NP ++ + + IP++DWG
Sbjct: 325 QKLEAERDVAQARGNSGLNVNITGSYGFTRNAPDFTNVYQNPQNQQRLRIGFQIPILDWG 384
Query: 381 VRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYE 440
+K + +N +VQ T Q+EL E++II+ V F + + + A A E+A+ Y
Sbjct: 385 RQKAMIQTSVANNKLVQSTVSQEELNFEQEIILKVKQFKIFRSRLILARRADEIAQRRYT 444
Query: 441 QTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTI 498
Q+R++I K +I+ L ++ + A+R+Y+ AL+ +W++Y ++R+LTL+DFE+ I
Sbjct: 445 VAQKRYLISKINITDLNIALQDKDRAKRDYLEALRGFWKNYHEIRQLTLYDFERKEVI 502
>gi|150005684|ref|YP_001300428.1| outer membrane protein TolC, putative [Bacteroides vulgatus ATCC
8482]
gi|149934108|gb|ABR40806.1| outer membrane protein TolC, putative [Bacteroides vulgatus ATCC
8482]
Length = 489
Score = 245 bits (625), Expect = 6e-63, Method: Composition-based stats.
Identities = 142/467 (30%), Positives = 248/467 (53%), Gaps = 3/467 (0%)
Query: 32 SAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTPLSY 91
+AQQ ++TL+L++ + +A ++S A A++ Y A YW YR FRA+ LPS++L +P
Sbjct: 19 TAQQEESITLSLQQAIEIAQENSPEAQAARHTYRAAYWNYRFFRANYLPSVTLTSSPTLN 78
Query: 92 KHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEKS 151
+ N+ + + +Q L++ +L QN TGG+ + T I F N +
Sbjct: 79 RE--INKITQPDGTNQFIQQDQLSTDLSLKINQNIWFTGGSLFVKTTTQRIDEFEDNH-T 135
Query: 152 QFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAMA 211
+++ P+ IGY Q+L GYN +W+ +I PL++ +A+K LE A + FF+LA A
Sbjct: 136 AYNTQPIVIGYEQQLFGYNSLKWDHRIEPLRYREARKAYAEALELVASETSTLFFNLATA 195
Query: 212 QAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAM 271
Q ++A N ++ + LYR E +Y I +I + E+ L+++++ + + NA I ++ M
Sbjct: 196 QTNLDIAAYNYASADTLYRYAEGRYNIGTITENEMLQLEINKLTEETNMMNARIEVEDQM 255
Query: 272 FALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQKLDK 331
L ++L ++ + + D I AL A +N+P KR+ LES+ L
Sbjct: 256 QTLRSFLGINREINLRVVPEDSIPQLEIPLQKALQLAFKNSPDPDTYKRKQLESRSALAS 315
Query: 332 TRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAKS 391
+ A A G +Q N F D YRNP +++ + +S+P++DWG KG+ +A+S
Sbjct: 316 AKANAGLKADLYVQFGLSQTGNKFADSYRNPMNQQYASIGISLPILDWGRGKGRVRVARS 375
Query: 392 NLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGKA 451
N+++V A+Q E ++ V F +Q + A + + A ++ + +I+GK+
Sbjct: 376 NVDLVDTQAEQGMKDFELNVCKMVRQFNLQAYRVAVAAKTDKTADRRHDVARRLYILGKS 435
Query: 452 DISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTI 498
I L + + A+RNYI ALK YW Y+ +R +T +DF + I
Sbjct: 436 TILDLNAAIAEKDTARRNYITALKTYWSLYYGIRSMTGYDFLRKAEI 482
>gi|156108144|gb|EDO09889.1| hypothetical protein BACOVA_04266 [Bacteroides ovatus ATCC 8483]
Length = 492
Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats.
Identities = 156/475 (32%), Positives = 254/475 (53%), Gaps = 4/475 (0%)
Query: 31 LSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTPLS 90
LSAQ+ +TLN E + +A S+ A A N YWE+R+FRAD LP ++L T +
Sbjct: 19 LSAQKEREITLN--EAIAMARIQSVDAAVALNELKTAYWEFRTFRADLLPEVNLTGTLPN 76
Query: 91 YKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEK 150
Y S+++ +S + R TL G+LS QN LTGG S+ + L YI+ G
Sbjct: 77 YNKSYSSYQNSDGSYG-FVRNNTLGLTGDLSIDQNIWLTGGKLSLTSSLDYIKQLGAGGD 135
Query: 151 SQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAM 210
F S+PV++ Q + G N +W R+I P+++ +A+ I EE A Y+F+L +
Sbjct: 136 RHFMSVPVTLQLTQPIFGVNNIKWNRRIEPVRYAEAKAAFITATEEVTMRAITYYFNLLL 195
Query: 211 AQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRA 270
A+ A++N++N + LY + K K+ I + EL LKL +NA+ + AE L
Sbjct: 196 AKENLGTAKQNQTNADHLYEVALAKRKMGQISENELLQLKLSALNAKAALTEAESDLNAK 255
Query: 271 MFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQKLD 330
MF L A+L ++ + LP+ + + L A + N +R+ LE+ ++
Sbjct: 256 MFQLRAFLGVGEDEVLNPVLPEAVDGPRMEYNQVLNKALERNSFAQNIRRRQLEADYEVA 315
Query: 331 KTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAK 390
R L + AS+G+ F VYRN + V++ + IP++DWG R+G+ +AK
Sbjct: 316 TARGN-LRSVDLFASVGYTGENRNFPAVYRNLQDNQIVQVGVKIPILDWGKRRGKVRVAK 374
Query: 391 SNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGK 450
SN ++V +Q+++ +DI + V F Q Q + A+EA +A+ Y+ + E F+IGK
Sbjct: 375 SNRDVVLSKIRQEQINFNQDIFLLVEHFNNQAQQLDIAKEADAIAQQRYKTSIETFLIGK 434
Query: 451 ADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNAI 505
+ L + N + EA++ +I+ L YW Y+++R LTL+DF N +E DF+ I
Sbjct: 435 INTLDLNDAQNSKDEARQKHISELYYYWYYYYQIRSLTLWDFRTNTELEADFDEI 489
>gi|88712073|ref|ZP_01106160.1| putative outer membrane protein TolC [Flavobacteriales bacterium
HTCC2170]
gi|88709479|gb|EAR01712.1| putative outer membrane protein TolC [Flavobacteriales bacterium
HTCC2170]
Length = 486
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 141/460 (30%), Positives = 265/460 (57%), Gaps = 2/460 (0%)
Query: 41 LNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTPLSYKHSFTNRYD 100
+ L E +++A S RA N + +YW YR+ AD LP +SL T Y +S T R
Sbjct: 23 IQLTEAIKIAQKKSPEYKRALNTHQRSYWRYRNHIADFLPQVSLDATLPEYSNSAT-RIL 81
Query: 101 SQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEKSQFSSIPVSI 160
+ + I+ +Q A +L +Q TGG F I+T L + G ++ + +S +P SI
Sbjct: 82 NDEGQYIFVKQNQSAIETSLRIQQRVPFTGGAFFINTKLDRVNRLGVDKSTNYSFVPFSI 141
Query: 161 GYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEE 220
Y Q + YN ++W+RKI PL++E++Q+ +I ++E+ + +F L AQ ++A++
Sbjct: 142 NYFQNSLFYNPYKWDRKIEPLRYEESQRNIIERMEDISLSTCQLYFGLLKAQVSLDIAKK 201
Query: 221 NRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNF 280
N SN + L +I E ++KI + + EL ++L +N++N+ + LKR LA +L
Sbjct: 202 NLSNQDTLLQITEGRFKIGKVAENELLQIELSHLNSKNNVTTNTVLLKRTSQDLARFLEL 261
Query: 281 DKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNA 340
+ + I L +P+ + F +S + A+ A +N +E +R+ LE++Q+L + +
Sbjct: 262 ETES-IELAIPEKLEDFVVSFEKAMEEAEKNRKSVIEFRRRRLEAEQELARVKGSNRLEI 320
Query: 341 GFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTA 400
+ G N+ A + D++++ Q++ V +++ IP+ DWGV K + +A+++L++V+
Sbjct: 321 NVRGNFGLNRRAGDYNDLFQDYDQQQSVSVSVGIPIFDWGVSKSRRKIAEADLSLVENDI 380
Query: 401 QQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLST 460
Q++ E++I + +++ Q+ + +AE+A E+A YE T+ER+I+GK I+ L L+
Sbjct: 381 DQEQQEFEQEIYLHTLNWSSQRDFLATAEKAQEIALKRYEITKERYILGKITITDLNLAQ 440
Query: 461 NRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEI 500
+ +A Y+ +L+ +W +Y+ LRKLTL+DF ++ ++I
Sbjct: 441 QEKDKAVLEYLKSLEEFWANYYILRKLTLYDFLEDEKLKI 480
>gi|154491002|ref|ZP_02030943.1| hypothetical protein PARMER_00919 [Parabacteroides merdae ATCC
43184]
gi|154088750|gb|EDN87794.1| hypothetical protein PARMER_00919 [Parabacteroides merdae ATCC
43184]
Length = 493
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 147/489 (30%), Positives = 254/489 (51%), Gaps = 2/489 (0%)
Query: 17 ITFAVLLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRA 76
I A++ L L AQ+ TV L LKE + LA S+ A A N YWEYR+ A
Sbjct: 4 IYIAIISLLLSDVGLQAQEQDTVRLTLKEAINLAQMQSVDAAVALNELKTAYWEYRTHVA 63
Query: 77 DRLPSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIH 136
D+LP ++ T +Y +T +Y + + +L G +S QN LTGG S++
Sbjct: 64 DQLPEINFKGTLPAYSKQYT-KYQQSDGSYTFVQNNSLGLNGEISIDQNIALTGGKISLN 122
Query: 137 TGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEE 196
+ L + + GK +++ S+P+ + Q + G N +W+R+I P+++++A+ I +E
Sbjct: 123 SSLDFNRQLGKGAFNEYMSVPIGLTLTQPIFGVNDQKWKRRIEPVRYQEAKAAYIESVEG 182
Query: 197 TAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNA 256
GYFF+L +A +A +N N +KLY I K KI I ++EL LKL +
Sbjct: 183 VTINTIGYFFNLLLANENLHIARQNLENADKLYEIAVAKRKIGHISESELMQLKLSALQM 242
Query: 257 QNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYL 316
+ A+ L MF L A+L + I LP+ + + + L A++NN
Sbjct: 243 KGKLTEAQSGLNANMFQLRAFLGLSEQEVIEPILPESAPSLRMIYEVVLQKAQENNSFAK 302
Query: 317 ESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPL 376
+R+ LE+ ++ + + A+IG+ +TF Y + VE+ ++IP+
Sbjct: 303 NIRRRQLEADYEVAAAKGNRR-SINLFATIGYTGKDHTFDAAYHRLKGNQVVEVGMTIPI 361
Query: 377 VDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAK 436
+DWG R+G+ +A+SN ++ +Q+E+ +DI + V +F Q + A+EA +A+
Sbjct: 362 LDWGKRRGKVKVAESNRDVTLSKIRQEEISFNQDIFLLVENFNNQAAQLEIAQEADVIAE 421
Query: 437 VAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNR 496
Y+ + E F+IGK +I L + + EA++ +I L +YW Y+ +R +TL+DF ++
Sbjct: 422 KRYKTSIETFMIGKINILDLNDAQQSKDEAKQKHIQELYDYWNYYYNIRSVTLYDFINDQ 481
Query: 497 TIEIDFNAI 505
T++ +F I
Sbjct: 482 TLDAEFEKI 490
>gi|29346940|ref|NP_810443.1| putative outer membrane protein OprM precursor [Bacteroides
thetaiotaomicron VPI-5482]
gi|29338838|gb|AAO76637.1| putative outer membrane protein OprM precursor [Bacteroides
thetaiotaomicron VPI-5482]
Length = 492
Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats.
Identities = 153/475 (32%), Positives = 252/475 (53%), Gaps = 4/475 (0%)
Query: 31 LSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTPLS 90
+SAQ+ +TLN E + +A S+ A A N +YWEYR+FRAD LP ++L T +
Sbjct: 19 VSAQKEREITLN--EAIAMARMQSVDAAVALNELKTSYWEYRTFRADLLPEINLKGTLPN 76
Query: 91 YKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEK 150
Y S+ + Y + + R L G LS QN LTGG S+ + L Y++ G +
Sbjct: 77 YNKSYGS-YQNPDGSYSFVRNSALGLSGELSIDQNIWLTGGQLSLTSSLDYLKQLGNSGD 135
Query: 151 SQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAM 210
S+PV++ Q ++G N +W R+I P+++ +A+ E I EE A Y+FDL +
Sbjct: 136 RHLMSVPVTLKLTQPILGVNNVKWNRRIEPVRYAEAKAEFITATEEVTMRAITYYFDLLL 195
Query: 211 AQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRA 270
A+ A +N +N +LY + K K+ I + EL LKL +NA+ + AE L
Sbjct: 196 AKETLGTARQNLTNANQLYEVAIAKRKMGQISENELLQLKLSALNAKAALTEAESDLNAK 255
Query: 271 MFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQKLD 330
MF L A+L ++ + +P+ + + L A + N +R+ LE+ +
Sbjct: 256 MFQLRAFLGVGEDEILRPVVPESVDCGKMEYNMVLNKALERNSFAQNIRRRQLEADYAVA 315
Query: 331 KTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAK 390
R L + AS+G+ + VYRN + V++ + IP++DWG R+G+ +AK
Sbjct: 316 TARGN-LRSINLFASVGYTGESRELSSVYRNLQDNQIVQVGVQIPILDWGKRRGKVRVAK 374
Query: 391 SNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGK 450
SN ++V +Q+++ +DI + V F Q Q + A+EA +A+ Y+ + E F+IGK
Sbjct: 375 SNRDVVLSKIRQEQINFNQDIFLLVEHFNNQAQQLEIAKEADGIAQQRYKTSIETFLIGK 434
Query: 451 ADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNAI 505
+ L + N + EA+R +I+ L YW ++++R LTL+DF+ N +E DF+ I
Sbjct: 435 INTLDLNDAQNAKDEARRKHISELYYYWYYFYQIRSLTLWDFQANTELEADFDEI 489
>gi|156861504|gb|EDO54935.1| hypothetical protein BACUNI_01457 [Bacteroides uniformis ATCC 8492]
Length = 495
Score = 238 bits (606), Expect = 9e-61, Method: Composition-based stats.
Identities = 147/465 (31%), Positives = 241/465 (51%), Gaps = 2/465 (0%)
Query: 41 LNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTPLSYKHSFTNRYD 100
+ L E + LA S+ A A N YWEYR+FRAD LP ++ T +Y S++ +
Sbjct: 30 ITLSEAIVLARTQSVDAAVALNELKTAYWEYRTFRADLLPEVNFTGTLPNYNKSYSTYQN 89
Query: 101 SQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEKSQFSSIPVSI 160
S + R TL G LS QN TGG S+ + L Y++ G QF S+PVS+
Sbjct: 90 SDGSYS-FVRNNTLGLSGQLSVDQNIWFTGGKLSLTSSLDYLKQLGSGGAKQFMSVPVSL 148
Query: 161 GYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEE 220
Q + G N +W R+I P+++ +A+ E I+ EE YFF+L +A+ A +
Sbjct: 149 ELTQPVFGVNTLKWNRRIEPVRYAEAKAEFISATEEVTMKTITYFFELLLAKESLATAMQ 208
Query: 221 NRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNF 280
N++N ++LY + K K+ I + +L LKL+ + + AE L MF L ++L
Sbjct: 209 NKTNADRLYEVAIAKRKMGQISENDLLQLKLNSLQGKADVTEAESNLNAKMFQLRSFLGV 268
Query: 281 DKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNA 340
+ + LP + D L A + N +R+ LE+ ++ R L +
Sbjct: 269 SEQESLNPVLPATVPDIKMEYDRVLNKALERNSFAQNIRRRQLEADYEVATARGN-LRSI 327
Query: 341 GFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTA 400
AS+G+ + F YR+ + V++ + IP++DWG R+G+ +AKSN +V
Sbjct: 328 DLFASVGYTGQNHEFSSAYRDLLDNQIVQVGVKIPILDWGKRRGKVRVAKSNREVVLSRI 387
Query: 401 QQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLST 460
+Q+++ +DI + V +F Q Q + AEEA +A+ Y+ + E F+IGK L +
Sbjct: 388 RQEQMDFNQDIFLLVANFNNQAQQLDIAEEADVIAEKRYKTSVETFMIGKISTLDLNDAQ 447
Query: 461 NRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNAI 505
N + EA++ +I+ L YW +++LR LTL+DFE++ +E DF +
Sbjct: 448 NSKDEARQKHISELYYYWYYFYQLRSLTLWDFERDTELEADFEEV 492
>gi|60280056|gb|AAX16396.1| outer membrane protein [uncultured murine large bowel bacterium BAC
31B]
Length = 495
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 147/465 (31%), Positives = 238/465 (51%), Gaps = 2/465 (0%)
Query: 41 LNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTPLSYKHSFTNRYD 100
+ L E + LA S+ A A N YWEYR+FRAD LP ++ T +Y S++ D
Sbjct: 30 ITLSEAIVLARTQSVDAAVALNELKTAYWEYRTFRADLLPEVNFTGTLPNYNKSYSTYQD 89
Query: 101 SQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEKSQFSSIPVSI 160
S + R TL G LS QN TGG S+ + L Y++ G QF S+PVS+
Sbjct: 90 SDGSYS-FVRNNTLGLSGQLSIDQNLWFTGGRLSLTSSLDYLKQLGSGGAKQFMSVPVSL 148
Query: 161 GYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEE 220
Q + G N +W R+I P+++ +A+ I+ EE YFF L +A+ A +
Sbjct: 149 ELTQPVFGVNTLKWSRRIEPVRYAEAKAAFISATEEVTMKTITYFFQLLLAKESLATAMQ 208
Query: 221 NRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNF 280
N++N ++LY + K K+ I + +L LKL+ + + AE L MF L ++L
Sbjct: 209 NKTNADRLYEVAIAKRKMGQISENDLLQLKLNSLQGKADVTEAESNLNAKMFQLRSFLGV 268
Query: 281 DKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNA 340
+ + LP + D L A + N +R+ LE+ ++ R L +
Sbjct: 269 SEQENLNPVLPATVPDIKMEYDCVLNKALERNSFAQNIRRRQLEADYEVATARGN-LRSI 327
Query: 341 GFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTA 400
AS+G+ + F YR+ + V++ + IP++DWG R+G+ +AKSN +V
Sbjct: 328 DLFASVGYTGQNHEFSSAYRDLLDNQIVQVGVKIPILDWGKRRGKVRVAKSNREVVLSKI 387
Query: 401 QQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLST 460
+Q+++ +DI + V +F Q Q + AEEA +A+ Y + E F+IGK L +
Sbjct: 388 RQEQMDFNQDIFLLVANFNNQAQQLDIAEEADVIAERRYRTSVETFMIGKISTLDLNDAQ 447
Query: 461 NRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNAI 505
N + EA++ +I+ L YW +++LR LTL+DFE++ +E DF +
Sbjct: 448 NSKDEARQKHISELYYYWYYFYQLRSLTLWDFERDTELEADFEEV 492
>gi|149276413|ref|ZP_01882557.1| putative exported outer membrane protein [Pedobacter sp. BAL39]
gi|149232933|gb|EDM38308.1| putative exported outer membrane protein [Pedobacter sp. BAL39]
Length = 502
Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 147/494 (29%), Positives = 260/494 (52%), Gaps = 9/494 (1%)
Query: 12 KKCGFITFAV-LLC------GLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMY 64
K G I F V L C G+ + + T+ L L E V A +S++A +A +
Sbjct: 8 KAYGLILFVVHLFCMTENVAGVNFINIQIIKSDTLKLTLYELVLQAKANSIAAKQALTIK 67
Query: 65 MANYWEYRSFRADRLPSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQ 124
NYW++R+++++ P L+L Y ++ + ++ S L Q
Sbjct: 68 ETNYWKWRTYKSNYHPQLALTGILPGYNRTYAQVLQPNGTV-AFQPIHNDNSSLKLDFSQ 126
Query: 125 NFDLTGGTFSIHTGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFE 184
+ +TGGT T L +F ++ +++IP +GY Q L+ +N +W++KI PLK+
Sbjct: 127 SIAVTGGTIYGTTELQRFNDFDRS-NVLYNAIPYGLGYTQPLMQFNSLKWDKKIEPLKYN 185
Query: 185 KAQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQA 244
++Q+ I E+ A YFFDL ++Q LAE N SNT K+ +I K+++ I
Sbjct: 186 ESQQGYIESQEKIAVSVTDYFFDLLLSQVNLHLAEMNLSNTGKILKIANTKFELGKIATN 245
Query: 245 ELFTLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDA 304
E+ L+L+ VNA+ + A+ ++ A L +Y + + +I + +P+ IS D
Sbjct: 246 EILQLQLEEVNAKKAVGAAKRDMEIASLNLRSYSGIEGDERIVVIMPEAVHDIDISIDRV 305
Query: 305 LMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQ 364
L A +N + R++ E+++ + K + E A A++GF+ A DVYR+P
Sbjct: 306 LTEAVENRSDAIAFVRRIAEARRDVAKAKGENGLVATLKANLGFSNAATHLWDVYRSPKT 365
Query: 365 REFVELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQM 424
++ +EL LSIP++DWG K + A++N +V +QD+ ++ I+ V F M ++
Sbjct: 366 QQSIELQLSIPVLDWGRSKSRTKTAEANQQLVSYEVEQDKQIFKQQIVTQVTLFNMMKEQ 425
Query: 425 IRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKL 484
+ +A +A Y+ ER+I+G I+ L+++ A+R+YI AL+++W +Y++L
Sbjct: 426 MVLTAQADRIASEKYKIANERYILGNLSITDLSIAFEASDRAKRDYITALRDFWGAYYQL 485
Query: 485 RKLTLFDFEKNRTI 498
R L+L+DFEKN+ I
Sbjct: 486 RYLSLYDFEKNQKI 499
>gi|153808638|ref|ZP_01961306.1| hypothetical protein BACCAC_02936 [Bacteroides caccae ATCC 43185]
gi|149128960|gb|EDM20177.1| hypothetical protein BACCAC_02936 [Bacteroides caccae ATCC 43185]
Length = 492
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 153/478 (32%), Positives = 252/478 (52%), Gaps = 10/478 (2%)
Query: 31 LSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTPLS 90
LSAQQ +TLN E + +A S+ A A N YWEYR+FRAD LP ++L T +
Sbjct: 19 LSAQQERKITLN--EAIAMARVQSVDAAVALNELKTAYWEYRTFRADLLPEVNLTGTLPN 76
Query: 91 YKHSFTNRYDSQQDID---IYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGK 147
Y S Y S Q+ D + R L G+LS QN LTGG S+ + L Y++ G
Sbjct: 77 YNKS----YGSYQNADGSYSFVRNSALGLSGDLSIDQNIWLTGGKLSLVSSLDYMKQLGS 132
Query: 148 NEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFD 207
F S+P+++ Q ++G N +W R+I P+++ +A+ I EE A Y+F+
Sbjct: 133 GGDRHFMSVPITLKLTQPILGVNNVKWNRRIEPVRYAEAKAAFITATEEVTMRAITYYFN 192
Query: 208 LAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRL 267
L +A+ A +N SN + LY++ K ++ I + EL LKL +NA+ S AE L
Sbjct: 193 LLLAEENLGTARQNLSNADHLYKVALAKREMGQISENELLQLKLSALNAKASLTEAESDL 252
Query: 268 KRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQ 327
MF L A+L ++ + +P+ + + L A + N +R+ LE+
Sbjct: 253 NAKMFQLRAFLGVGEDENLRPVIPETVDGTKMEYNQVLSKALERNSFAQNIRRRQLEADY 312
Query: 328 KLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYN 387
++ R L + AS+G+ F VY+N + V++ + IP++DWG R+G+
Sbjct: 313 EVATARGN-LRSIDLFASVGYTGENRDFPAVYKNLQDNQIVQVGVKIPILDWGKRRGKVR 371
Query: 388 MAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFI 447
+AKSN +V +Q+++ ++I + V +F Q Q + A+EA +A+ Y+ + E F+
Sbjct: 372 VAKSNREVVLSRIRQEQINFNQNIFLLVENFNNQAQQLAIAKEADLIAQQRYKTSIETFL 431
Query: 448 IGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNAI 505
IGK + L + + + A++ +I+ L YW ++++R LTL+DF N +E DF+ I
Sbjct: 432 IGKINTLDLNDAQSSKDAARQKHISELYYYWYYFYQIRSLTLWDFRTNTELEADFDEI 489
>gi|156107743|gb|EDO09488.1| hypothetical protein BACOVA_05350 [Bacteroides ovatus ATCC 8483]
Length = 494
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 141/495 (28%), Positives = 258/495 (52%), Gaps = 7/495 (1%)
Query: 12 KKCGFITFAVLLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEY 71
K+ ++ LLC ++ Q T + L++ + +A S A+ +MA YW++
Sbjct: 3 KRLLLVSIGWLLCS----AITGQNLTTRNITLEQAIEIAHARSPQVQMAQLNFMAQYWDF 58
Query: 72 RSFRADRLPSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGG 131
RS++A LPSL+L +Y S + D + Y TL + ++S QN LTGG
Sbjct: 59 RSYKAQFLPSLNLHGNLGNYNRSLVDVRDPETGRISYVANNTLNNNLSISIDQNIPLTGG 118
Query: 132 TFSIHTGLGYIQNFGKNEKSQ-FSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKEL 190
S++T L + F N +Q ++S P++I Y Q L +N +W +K PL++EK +K
Sbjct: 119 KVSLNTSLDRLDQF--NYGTQIYNSNPLTIHYTQPLRSFNELKWRKKTEPLRYEKEKKVY 176
Query: 191 IAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLK 250
+ +E FF + AQ ++ EEN ++T +Y I ++ I ++ ++EL L+
Sbjct: 177 LESMENITLQTTSQFFSVLSAQTSHQKNEENLNDTRSMYDIALKRSAIGTVTKSELLQLE 236
Query: 251 LDRVNAQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQ 310
L +NA+ + N+ L+ A+F YL ++T L P + D L A Q
Sbjct: 237 LALMNAELTVSNSRTNLEIALFNFKTYLGISESTSFKLLPPTIAPDVIMEYDFVLGKALQ 296
Query: 311 NNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVEL 370
N+ + L + + +E+QQ + + + A++GF+Q N+F + YR +E V +
Sbjct: 297 NSSQNLSLQLKEIEAQQDVAQAKAAKGIQVELQANLGFSQTGNSFNEAYRLLKDQEIVGV 356
Query: 371 TLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEE 430
+L++P+ DWG+ +G+ MA++ + + +QD ++ ++DI + V F Q + + +
Sbjct: 357 SLTMPIYDWGMSRGKVKMAEAKARLARTQNEQDAIQFQQDIRIKVMQFNQQGRQCEISAK 416
Query: 431 AVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLF 490
A+ +A+ Y+ T++RF+ G ++ L + +A YI+ L +W +YF+LRKL+L+
Sbjct: 417 ALIVAQQRYDITKDRFLNGGITVTDLNTAQKELDDASGQYISQLSTFWGAYFELRKLSLY 476
Query: 491 DFEKNRTIEIDFNAI 505
DF + I +F+ I
Sbjct: 477 DFIHKKDISAEFDQI 491
>gi|150004890|ref|YP_001299634.1| putative outer membrane protein OprM precursor [Bacteroides
vulgatus ATCC 8482]
gi|149933314|gb|ABR40012.1| putative outer membrane protein OprM precursor [Bacteroides
vulgatus ATCC 8482]
Length = 494
Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats.
Identities = 141/467 (30%), Positives = 242/467 (51%), Gaps = 2/467 (0%)
Query: 41 LNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMTPLSYKHSFTNRYD 100
+ L+E + +A S+ A A N YWEYR+FRAD LP ++ T SY + N Y
Sbjct: 29 ITLEEAITIARVQSVDAAVALNELKTAYWEYRTFRADLLPEMNFEATIPSYNKKY-NSYQ 87
Query: 101 SQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEKSQFSSIPVSI 160
+ R + G +S QN LTGG S++T L +++ ++ ++ S+PV++
Sbjct: 88 QDNGAYTFVRNNYMEMNGEVSIDQNIWLTGGKLSLNTSLDFLKQLDGDKSKRYMSVPVAL 147
Query: 161 GYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEE 220
Q + G N +W R+I P+++ +A+ + EE YFF+L +A+ +A +
Sbjct: 148 TLEQPIFGVNTIKWNRRIEPVRYAEAKAAFLTATEEVTMTTINYFFNLLLAKENVGIARQ 207
Query: 221 NRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNF 280
N N +KLY + + K + I + +L L+L+ +NA+++ E LK MF L ++L
Sbjct: 208 NLKNADKLYEVAKAKRSMGQISENDLLQLELNVLNARSTLTENESNLKSNMFKLRSFLAL 267
Query: 281 DKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNA 340
++ ++ +P+ T ++ D L A NN +R+ LE+ ++ K K L
Sbjct: 268 GEDEELEPVVPETIPTVLLNYPDVLDKALANNSFAHNIRRRQLEADFEVAKA-KGNLREI 326
Query: 341 GFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTA 400
A +GF N F YR + VE+ IP++DWG R+GQ +A+SN ++ +
Sbjct: 327 KLYAQVGFTGTDNEFNSAYRRLKDNQIVEVGFKIPILDWGKRRGQVKIAQSNRDVTESKL 386
Query: 401 QQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLST 460
+Q+ + +++ + V F QQ ++ A++A ++A+ Y E F++GK L S
Sbjct: 387 RQETMNFNQNLFILVEQFNNQQAQLQIADDADKIAQKRYSTNVETFMVGKISTLDLNDSQ 446
Query: 461 NRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNAIRK 507
++ EA++ +I L YW Y++LR LTL+DF N I+ DF I K
Sbjct: 447 TKKDEARQKHINELFYYWYYYYQLRSLTLWDFNTNTNIDADFEKIIK 493
>gi|150008564|ref|YP_001303307.1| outer membrane protein TolC [Parabacteroides distasonis ATCC 8503]
gi|149936988|gb|ABR43685.1| outer membrane protein TolC [Parabacteroides distasonis ATCC 8503]
Length = 494
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 143/492 (29%), Positives = 246/492 (50%), Gaps = 3/492 (0%)
Query: 16 FITFAVLLCGLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFR 75
+I L G+ G + V + L++ +++A S+ A A N YWE+R+ R
Sbjct: 5 YIAMCCLWAGISGV-CAQDNTNKVRITLRQAIQIAQLQSVDAAVALNELRTAYWEFRTHR 63
Query: 76 ADRLPSLSLGMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSI 135
AD+LP + T SY ++ +Y Y + L G +S QN LTGG ++
Sbjct: 64 ADQLPEVIFTGTLPSYSKQYS-KYQQSDGSYTYVQNNALGLNGEISIAQNIALTGGKIAL 122
Query: 136 HTGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLE 195
+T L + + G ++F S+PVS+ Q + G N +W+R+I P+++++A+ + +E
Sbjct: 123 NTSLDFTRQLGSGAYNEFMSVPVSLTLTQPIFGVNDQKWKRRIEPVRYQEAKAAYMENVE 182
Query: 196 ETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVN 255
+F+L +A+ ++ +N N KLY I K KI I ++EL LK +
Sbjct: 183 NVTIATITNYFNLLLAEDNLDICNQNLLNANKLYDIAVAKRKIGHISESELMRLKQSALQ 242
Query: 256 AQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRY 315
A+ A+ MF L ++L + I LP+ + + L A++NN
Sbjct: 243 AKGKLTEAQSNYNAMMFKLRSFLGMSEQDVIEPVLPEAIEGVRMDYQAVLEKAQENNSFS 302
Query: 316 LESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIP 375
R+ LE+ + T K + AS+G+ + R Y + VE+ LSIP
Sbjct: 303 KNIMRRQLEADYDV-ATAKGNRRSINLFASVGYTGKDMSMRGAYNPLKDNQIVEVGLSIP 361
Query: 376 LVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELA 435
++DWG RKG+ +A+SN ++V +Q+++ +DI + V +F Q + A E LA
Sbjct: 362 ILDWGKRKGKVKVAESNRDVVLSKIRQEQMDFNQDIFLLVENFNNQAAQLEIAAEVDTLA 421
Query: 436 KVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKN 495
+ Y+ + E F+IGK DI L + + + +A++ +I L YW+ ++ +R +TL+DF N
Sbjct: 422 EKRYKTSIETFMIGKIDILDLNDAQSSKDDAKQKHIQELYYYWRYFYNIRSITLYDFLNN 481
Query: 496 RTIEIDFNAIRK 507
RT++ DF I K
Sbjct: 482 RTLDADFEEIVK 493
>gi|53712807|ref|YP_098799.1| putative outer membrane protein OprM precursor [Bacteroides
fragilis YCH46]
gi|52215672|dbj|BAD48265.1| putative outer membrane protein OprM precursor [Bacteroides
fragilis YCH46]
Length = 490
Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats.
Identities = 149/483 (30%), Positives = 247/483 (51%), Gaps = 4/483 (0%)
Query: 25 GLCGFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSL 84
C LSAQ+ +TLN E + LA S+ A A N YWEYR+FRAD LP ++
Sbjct: 11 AFCSLALSAQETQEITLN--EAIALARTQSVDAAVALNELKTAYWEYRTFRADLLPEVNF 68
Query: 85 GMTPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQN 144
T SY + N Y ++ + R L G LS QN TGG S+ + L +++
Sbjct: 69 SGTLPSYSKQY-NSYQNEDGSYSFVRSNKLGLNGALSIDQNIWFTGGKVSLSSSLDFMKQ 127
Query: 145 FGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGY 204
G QF S+P+++ Q + G N +W R+I P+++E+A+ I E A Y
Sbjct: 128 LGSGGSRQFMSVPIALQLTQPIFGVNNLKWNRRIEPVRYEEAKAAFITATETVTMNAITY 187
Query: 205 FFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAE 264
FF+L A+ A +N+ N ++LY + K K+ I + EL LKL + A+ + +AE
Sbjct: 188 FFNLLSAKETLGTARQNQVNADRLYEVAGAKRKMGQISENELLQLKLAALKARAAVTDAE 247
Query: 265 IRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLE 324
L MF L ++L + + +P+ + + L A + N +R+ LE
Sbjct: 248 SNLNAHMFRLRSFLAIGNDLILEPVVPESAPNLKMEYNQVLNKALERNSFAHNIRRRQLE 307
Query: 325 SQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKG 384
++ ++ R L + A++G+ + Y N + VE+ + IP++DWG R+G
Sbjct: 308 AEYEVATARGN-LRSVDLFANVGYTGLNKDLSPAYHNLLDNQVVEVGVKIPILDWGKRRG 366
Query: 385 QYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQE 444
+ +AKSN ++ +++++ ++DI + V F Q Q + A EA ++A+ Y+ + E
Sbjct: 367 KVRVAKSNRDVTLSKIKKEQMDFDQDIFLLVEHFNNQAQQLSIANEADKIAQQRYKTSVE 426
Query: 445 RFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNA 504
F+IGK + L + N + +A++ +I L YW Y++LR LTL+DF+ N +E DF
Sbjct: 427 TFLIGKINTLDLNDAQNSKDDARQKHINELYWYWYYYYQLRSLTLWDFQNNTPLEADFED 486
Query: 505 IRK 507
I K
Sbjct: 487 IVK 489
>gi|34540126|ref|NP_904605.1| hypothetical protein PG0285 [Porphyromonas gingivalis W83]
gi|34396438|gb|AAQ65504.1| hypothetical protein PG_0285 [Porphyromonas gingivalis W83]
Length = 501
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 135/475 (28%), Positives = 237/475 (49%), Gaps = 7/475 (1%)
Query: 31 LSAQQPGTVT---LNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPSLSLGMT 87
+SAQQ L+L E +RLA S+ A A A YW++R++RA+ LP ++L T
Sbjct: 24 VSAQQVAAADPSPLSLTEAIRLARKQSVDAAVALQELRAAYWQWRTYRAELLPGVNLTAT 83
Query: 88 PLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFG- 146
Y+ +++ Y + R L G++S QN LTGG S+ + L +I G
Sbjct: 84 LPDYRRAYS-LYQQPDGSYSFVRSNALRLSGHISVDQNIWLTGGKLSLVSSLEHINPLGT 142
Query: 147 KNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFF 206
+ F S+P+S+ +Q L G N +W R+I P+++E+A++ +A EE + ++F
Sbjct: 143 EGADRHFMSVPISLTLSQPLFGLNEMKWSRRIEPVRYEEARRRFVANTEEVSVSCIDHYF 202
Query: 207 DLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIR 266
+A+ EY AE N NT KL + K KI + + EL +++ +A ++ ++
Sbjct: 203 SALLAREEYNNAETNLRNTAKLVEVARAKKKIGKLSENELRAVEISYASASSAILSSRTA 262
Query: 267 LKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQ 326
L+ A +L+ +L + ++L +P +S + + A +N+P E KR++LE+
Sbjct: 263 LRGAEMSLSIFLGLQPDEVLSLSIPADTIFTPVSYERVMELAGRNHPFVGEMKRRMLEAD 322
Query: 327 QKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNP-SQREFVELTLSIPLVDWGVRKGQ 385
+ L + + E F+ A IG+ A+ D Y V + + IPLVDWG +G+
Sbjct: 323 RSLARAKSER-FSIELMAQIGYAGQADNLHDAYGGRLKDNSSVSVGVRIPLVDWGRGRGR 381
Query: 386 YNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQER 445
+A+SN + + +Q+E R I + V Q +++ A +A+ Y E
Sbjct: 382 IRLAESNRRLEEHRLRQEEERWHRQIFLLVEKHNNQLRILELARRTDSIAQARYHTAVET 441
Query: 446 FIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEI 500
F +G L + + + A+ + + AL +YW Y+ LR LT +D ++ I+I
Sbjct: 442 FTVGAISTLDLNAAQDAKDLARTSLVRALHHYWSYYYNLRSLTAYDPVRDEEIDI 496
>gi|60680955|ref|YP_211099.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
gi|60492389|emb|CAH07156.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
Length = 419
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 123/417 (29%), Positives = 216/417 (51%), Gaps = 4/417 (0%)
Query: 94 SFTNRYDSQQDID---IYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEK 150
S++ +Y+S Q+ D + R L G LS QN TGG S+ + L +++ G
Sbjct: 3 SYSKQYNSYQNEDGSYSFVRSNKLGLNGALSIDQNIWFTGGKVSLSSSLDFMKQLGSGGS 62
Query: 151 SQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAM 210
QF S+P+++ Q + G N +W R+I P+++E+A+ I E A YFF+L
Sbjct: 63 RQFMSVPIALQLTQPIFGVNNLKWNRRIEPVRYEEAKAAFITATETVTMNAITYFFNLLS 122
Query: 211 AQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRA 270
A+ A +N+ N ++LY + K K+ I + EL LKL + A+ + +AE L
Sbjct: 123 AKETLGTARQNQVNADRLYEVAGAKRKMGQISENELLQLKLAALKARAAVTDAESNLNAH 182
Query: 271 MFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQKLD 330
MF L ++L + + +P+ + + L A + N +R+ LE++ ++
Sbjct: 183 MFRLRSFLAIGNDLILEPVVPESAPNLKMEYNQVLNKALERNSFAHNIRRRQLEAEYEVA 242
Query: 331 KTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAK 390
R L + A++G+ + Y N + VE+ + IP++DWG R+G+ +AK
Sbjct: 243 TARGN-LRSVDLFANVGYTGLNKDLSPAYHNLLDNQVVEVGVKIPILDWGKRRGKVRVAK 301
Query: 391 SNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGK 450
SN ++ +++++ ++DI + V F Q Q + A EA ++A+ Y+ + E F+IGK
Sbjct: 302 SNRDVTLSKIKKEQMDFDQDIFLLVEHFNNQAQQLSIANEADKIAQQRYKTSVETFLIGK 361
Query: 451 ADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKNRTIEIDFNAIRK 507
+ L + N + +A++ +I L YW Y++LR LTL+DF+ N +E DF I K
Sbjct: 362 INTLDLNDAQNSKDDARQKHINELYWYWYYYYQLRSLTLWDFQNNTPLEADFEDIVK 418
>gi|60679599|ref|YP_209743.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
gi|60491033|emb|CAH05781.1| putative outer membrane protein [Bacteroides fragilis NCTC 9343]
Length = 489
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 128/484 (26%), Positives = 235/484 (48%), Gaps = 13/484 (2%)
Query: 21 VLLCGLCGFRLSAQQ-PGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRL 79
+L+ LC Q P VTL+ + RL+ +SS + N + + +Y +++ L
Sbjct: 8 ILVFSLCYTNAYCQSIPREVTLD-EVINRLSLESSSAKIELLN-FQNDLLQYENYKKSFL 65
Query: 80 PSLSLGMTPLSYKHSFTNRYDSQQDID---IYRRQQTLASYGNLSAKQNFDLTGGTFSIH 136
P+ L P+++ S QQ ID Y + + + +Q +TGG SI
Sbjct: 66 PAFVLNFNPINFNRSLRLL---QQPIDGSYSYVEDNSNNTNFGTTVRQKISITGGELSIG 122
Query: 137 TGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRF-RWERKIAPLKFEKAQKELIAQLE 195
+ + Y+ F + + S FS+ P I Y+Q+L G + R E KI K E A K+ + +
Sbjct: 123 SNINYLNEFSRKQNS-FSTNPFFISYSQQLWGGGKLQRLENKIERAKNEVAVKQYCSNIA 181
Query: 196 ETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVN 255
+ + A + +++ + ELA + + + + L I E K + SI + + ++L +N
Sbjct: 182 QIQQQALTLYLSAILSKMDSELAIDIKQSNDTLLHIAEIKLRNGSITEYDYKQMELQSLN 241
Query: 256 AQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRY 315
Q ++NA + L +L + N +IT+ PD+ I A+ + ++NNP
Sbjct: 242 LQYMYENAVRHYAESRQKLFTFLGIENNAEITI--PDFDLPLTIDARLAIYYVKKNNPIS 299
Query: 316 LESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIP 375
+ + Q LE ++ L + + FN S + G NQ A T D YR+ + R+ V + IP
Sbjct: 300 NQQEIQQLEEEKNLFSIKLKNRFNGNISLNYGINQYAETLADAYRHGNTRQSVIIEFQIP 359
Query: 376 LVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELA 435
+ WG+ K +AK+N + +L ++ E ++ + + ++ +A A L+
Sbjct: 360 IFQWGINKNNIRIAKNNYDASRLRIEKKIFEFENEVKEKINAYDHSVKLWLTASRAYALS 419
Query: 436 KVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKN 495
K Y+ ++F +GK + L + R +A + Y +A+K+ ++S+F LR L L+DF+KN
Sbjct: 420 KEQYKMLTKKFSLGKVSVYELATAQKERNDAMQRYYSAIKDSYESFFTLRNLALYDFKKN 479
Query: 496 RTIE 499
+E
Sbjct: 480 VELE 483
>gi|53711293|ref|YP_097285.1| putative outer membrane protein TolC [Bacteroides fragilis YCH46]
gi|52214158|dbj|BAD46751.1| putative outer membrane protein TolC [Bacteroides fragilis YCH46]
Length = 489
Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats.
Identities = 128/484 (26%), Positives = 234/484 (48%), Gaps = 13/484 (2%)
Query: 21 VLLCGLCGFRLSAQQ-PGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRL 79
+L+ LC Q P VTL+ + RL+ +SS + N + + Y +++ L
Sbjct: 8 ILVFSLCYTNAYCQSIPREVTLD-EVINRLSLESSSAKIELLN-FQNDLLRYENYKKSFL 65
Query: 80 PSLSLGMTPLSYKHSFTNRYDSQQDID---IYRRQQTLASYGNLSAKQNFDLTGGTFSIH 136
P+ L P+++ S QQ ID Y + + + +Q +TGG SI
Sbjct: 66 PAFVLNFNPINFNRSLRLL---QQPIDGSYSYVEDNSNNTNFGTTVRQKISITGGELSIG 122
Query: 137 TGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRF-RWERKIAPLKFEKAQKELIAQLE 195
+ + Y+ F + + S FS+ P I Y+Q+L G + R E KI K E A K+ + +
Sbjct: 123 SNINYLNEFSRKQNS-FSTNPFFISYSQQLWGGGKLQRLENKIERAKNEVAVKQYCSNIA 181
Query: 196 ETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVN 255
+ + A + +++ + ELA + + + + L I E K + SI + + ++L +N
Sbjct: 182 QIQQQALTLYLSAILSKMDSELAIDIKQSNDTLLHIAEIKLRNGSITEYDYKQMELQSLN 241
Query: 256 AQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRY 315
Q ++NA ++ L +L + N +IT+ PD+ I A+ + ++NNP
Sbjct: 242 LQYMYENAVKHYAESIQKLFTFLGIENNAEITI--PDFDLPLTIDARLAIYYVKKNNPIS 299
Query: 316 LESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIP 375
+ + Q LE ++ L + + FN S + G NQ A T D YR+ + R+ V + IP
Sbjct: 300 NQQEIQQLEEEKNLFSIKLKNRFNGNISLNYGINQYAETLADAYRHGNTRQSVIIEFQIP 359
Query: 376 LVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELA 435
+ WG+ K +AK+N + +L ++ E ++ + + ++ +A A L
Sbjct: 360 IFQWGINKNNIRIAKNNYDASRLRIEKKMFEFENEVKEKINAYDHSVKLWLTASRAYALL 419
Query: 436 KVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLTLFDFEKN 495
K Y+ ++F +GK + L + R +A + Y +A+K+ ++S+F LR L L+DF+KN
Sbjct: 420 KEQYKMLTKKFSLGKVSVYELATAQKERNDAMQRYYSAIKDSYESFFTLRNLALYDFKKN 479
Query: 496 RTIE 499
+E
Sbjct: 480 VELE 483
>gi|29345707|ref|NP_809210.1| putative outer membrane lipoprotein silC precursor [Bacteroides
thetaiotaomicron VPI-5482]
gi|29337600|gb|AAO75404.1| putative outer membrane lipoprotein silC precursor [Bacteroides
thetaiotaomicron VPI-5482]
Length = 498
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 119/478 (24%), Positives = 218/478 (45%), Gaps = 22/478 (4%)
Query: 28 GFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPS-LSLGM 86
G L++Q G + L + + + +A ++S S R M + Y + + L S SL +
Sbjct: 20 GIALTSQ--GQIPLTIDKAMEIAQENSPS-LRRSYMNLERYKQNLLAQKASLKSRFSLNL 76
Query: 87 TPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFG 146
P+ Y + R+D++ + + +T + G Q T GT S+ G+ N
Sbjct: 77 NPVDYNKN--RRFDNR--LSQWYTNETFNTSGTFQVDQPILWTDGTISLINRFGWQDNSS 132
Query: 147 KNEKSQFSSIPVS----IGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAA 202
E + S+ S + Q + YN+ + E K +E A Q T +
Sbjct: 133 IIEGDKTSNRAFSNDLYLQLTQPIFTYNKRKMELKQIEYDYENANISYALQQLNTEKSIT 192
Query: 203 GYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQN 262
F+ + MAQ+ E++ E N ++ Y I + K + + ELF +L+ A++S
Sbjct: 193 DQFYSVYMAQSNLEISREELVNAQQSYDIIKNKVEADLAAKDELFQAELNLATARSSVDE 252
Query: 263 AEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQL 322
+++ L+ A L L + I + K ++ D A+ H + LE +++
Sbjct: 253 SQVNLENAKDKLKQTLGMRLDEDILVFAEVEIKPIQVNLDQAISHGLGSR---LELRQRE 309
Query: 323 LESQQ-KLDKTRKEALFNAGFSASIGFNQIANT--FRDVYRNPSQREFVELTLSIPLVDW 379
+ES++ + D + +AL SI F I + VY NP+Q V ++ ++P+ DW
Sbjct: 310 IESKELEFDMIKTKALNEFKGDVSISFGLIGDNSHLNKVYNNPTQNPRVSISFAVPIFDW 369
Query: 380 GVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAY 439
G +K + K I +L Q+D++ +E +I + + I+ AE+ V+ A++ Y
Sbjct: 370 GEKKARIKAQKMAQRINELEFQEDKVDIELNIRQVWRNLENLRTQIKIAEQNVQNAQLTY 429
Query: 440 EQTQERFIIGKADISSLTLSTNRRQEAQR--NYIAALKNYWQSYFKLRKLTLFDFEKN 495
+ Q R+ G DI+ + +S + Q + + Y AL NY L+ L+L+DF+KN
Sbjct: 430 DLNQTRYREG--DITGMEMSQFQTQLSNKKITYTQALINYRIELLNLKILSLYDFDKN 485
>gi|153807980|ref|ZP_01960648.1| hypothetical protein BACCAC_02266 [Bacteroides caccae ATCC 43185]
gi|149129589|gb|EDM20803.1| hypothetical protein BACCAC_02266 [Bacteroides caccae ATCC 43185]
Length = 498
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 115/478 (24%), Positives = 214/478 (44%), Gaps = 22/478 (4%)
Query: 28 GFRLSAQQPGTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWEYRSFRADRLPS-LSLGM 86
G L +Q G + L + + + +A ++S S R M + Y + + L S SL +
Sbjct: 20 GITLPSQ--GQIPLTIDKAMEIAQENSPS-LRRSYMNLERYKQNLIAQKASLKSRFSLNL 76
Query: 87 TPLSYKHSFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFG 146
PL Y + R+D++ + + +TL S G +Q T GT S+ G+ N
Sbjct: 77 NPLDYNKN--RRFDNR--LSQWYTNETLNSSGTFQIEQPILWTDGTISLINKFGWQDNNS 132
Query: 147 KNEKSQFSSIPVS----IGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAA 202
E ++ S S + Q + YN+ + E K +E A Q T +
Sbjct: 133 ILEGNKTSDRAFSNDLYLQLTQPIFTYNKRKMELKQIEYDYENADISYALQRLNTEKSIT 192
Query: 203 GYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQN 262
F+ + MAQ+ E++ E N ++ Y I + K + + ELF +L+ A++S
Sbjct: 193 DQFYAVYMAQSNLEISREELINAQQSYDIIKNKVEADLAAKDELFQAELNLATARSSVDE 252
Query: 263 AEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQL 322
+++ L+ A L L + I + K + + A+ H + LE +++
Sbjct: 253 SKVSLENAKDKLKQTLGMRLDEDILVFAEVDIKPIQVDLEQAITHGLGSR---LELRQRE 309
Query: 323 LESQQ---KLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDW 379
+ES++ ++ KT+ F S S G ++ NP+Q V ++ ++P+ DW
Sbjct: 310 IESKELEFEMIKTKALNEFKGDISLSFGLMGDNRHLNKMFNNPTQNPRVSISFTVPIFDW 369
Query: 380 GVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAY 439
G ++ + K I +L ++++ +E +I + I+ AE+ V+ A++ Y
Sbjct: 370 GEKRARIKAQKVAQQINELEFHEEKVDIELNIRQVWRSLENLRTQIKIAEQNVQNAQLTY 429
Query: 440 EQTQERFIIGKADISSLTLSTNRRQEAQR--NYIAALKNYWQSYFKLRKLTLFDFEKN 495
+ Q R+ G DI+ + +S + Q + + Y AL NY L+ L+L+DF+KN
Sbjct: 430 DLNQTRYREG--DITGMEMSQFQTQLSNKKITYTQALINYRIELLNLKILSLYDFDKN 485
>gi|154493332|ref|ZP_02032652.1| hypothetical protein PARMER_02669 [Parabacteroides merdae ATCC
43184]
gi|154086542|gb|EDN85587.1| hypothetical protein PARMER_02669 [Parabacteroides merdae ATCC
43184]
Length = 491
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 108/474 (22%), Positives = 210/474 (44%), Gaps = 24/474 (5%)
Query: 37 GTVTLNLKETVRLAGDSSLSAFRAKNMYMANYWE-YRSFRADRLPSLSLGMTPLSYK--H 93
G V+L +++ + +A + S S R +M + Y + + RA SL + P+ Y
Sbjct: 20 GQVSLTIEKAMDIAEEHSPS-LRRSHMNLERYQQNLVAQRASLKSKFSLNLNPVDYSKSR 78
Query: 94 SFTNRYDSQQDIDIYRRQQTLASYGNLSAKQNFDLTGGTFSIHTGLGYIQNFGKNEKSQF 153
SF NR + + ++ G Q T G S+ G+ N + ++
Sbjct: 79 SFDNRLSQ------WYTNERFSATGTFQVDQPILWTDGVLSLINRFGWQDNNSNIDGTKT 132
Query: 154 SSIPVS----IGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLA 209
S+ S + +Q + YN+ + E + +E A Q T + F+ +
Sbjct: 133 SNKAFSNDLYLQLSQPIFTYNKRKMELQQIEYDYENANISYALQRLSTEKDITQQFYSVY 192
Query: 210 MAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKR 269
MAQ++ + E +N ++ Y I + K + + ELF +++ +A++S + ++ L+
Sbjct: 193 MAQSQLAITREELTNAQQSYEIIKNKVEADLAARDELFQAEVNLASARSSLEEQQVSLEN 252
Query: 270 AMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQLLESQQ-K 328
+ L L D N I + K ++ + A+ H ++ LE +++ +ES++
Sbjct: 253 SKDQLKQTLGMDLNEDIMVFAEVQIKPVEVNLEKAIQHGLESR---LELRQREIESKELA 309
Query: 329 LDKTRKEAL--FNAGFSASIGFNQIANTFRDVYRNPSQREFVELTLSIPLVDWGVRKGQY 386
D + +AL F + S G +Y NP+Q V ++ S+P+ DWG +K +
Sbjct: 310 FDMIKTKALNEFKGDIALSFGLIGDNRHLEKIYNNPTQNPRVAISFSVPIFDWGEKKARV 369
Query: 387 NMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERF 446
+ I +L +D++ +E +I T + I+ A++ V A+ Y+ R+
Sbjct: 370 KAQEVAQKINRLEFHEDKVNIELNIRQTWRNLENLLSQIKIAKQNVANAQRTYDLNLTRY 429
Query: 447 IIGKADISSLTLSTNRRQEAQRN--YIAALKNYWQSYFKLRKLTLFDFEKNRTI 498
G DI+ + ++ + Q + + Y AL NY L+ L+L+DFE + I
Sbjct: 430 REG--DITGMDMNQFQTQLSNKKIAYTQALINYKIELLNLKILSLYDFEHDVPI 481
>gi|153213363|ref|ZP_01948752.1| outer membrane protein TolC, putative [Vibrio cholerae 1587]
gi|124116016|gb|EAY34836.1| outer membrane protein TolC, putative [Vibrio cholerae 1587]
gi|150423543|gb|EDN15486.1| outer membrane protein TolC, putative [Vibrio cholerae AM-19226]
Length = 419
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 75/308 (24%), Positives = 141/308 (45%), Gaps = 18/308 (5%)
Query: 186 AQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAE 245
AQ E + A +F LA AQ+ LA++ +++ +L I E++Y I E
Sbjct: 109 AQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVE 168
Query: 246 LFTLKLDRVNAQNSFQNA--EIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDD 303
L L++++++ +++ NA E+ KR+ ++ + + ++ Q P F+ DD
Sbjct: 169 LEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDD 228
Query: 304 ALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPS 363
L A+ ++P L + +++ SQ + K + ++ + AS G Y++
Sbjct: 229 WLTAAKDHSPELLIAIQKVAISQ--IAKQQSQSGYYPSLRASAG-----------YQDGD 275
Query: 364 QR--EF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTM 420
QR EF LTLSIP+ G + A N + Q ++ E+ L++++ + +
Sbjct: 276 QRNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLDQNLRQQIQQVEI 335
Query: 421 QQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQS 480
+ Q I A++ V Q+ F G A+ S L + N A+ N + +YW+
Sbjct: 336 EWQQITMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDAHNSLFRAKHNLASRWYSYWRQ 395
Query: 481 YFKLRKLT 488
+L KLT
Sbjct: 396 RIELLKLT 403
>gi|153803431|ref|ZP_01958017.1| outer membrane protein TolC, putative [Vibrio cholerae MZO-3]
gi|124121024|gb|EAY39767.1| outer membrane protein TolC, putative [Vibrio cholerae MZO-3]
Length = 419
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 18/308 (5%)
Query: 186 AQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAE 245
AQ E + A +F LA AQ+ LA++ +++ +L I E++Y I E
Sbjct: 109 AQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVE 168
Query: 246 LFTLKLDRVNAQNSFQNA--EIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDD 303
L L++++++ +++ NA E+ KR+ ++ + + ++ P F+ DD
Sbjct: 169 LEELRVNQLDEESTILNAKAELETKRSQLSILINASAPQVDEVDTHTPTPSWPFSAELDD 228
Query: 304 ALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPS 363
L A+ ++P L + +++ SQ + K + ++ + AS G Y++
Sbjct: 229 WLTAAKDHSPELLIAIQKVAISQ--IAKQQSQSGYYPSLRASAG-----------YQDGD 275
Query: 364 QR--EF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTM 420
QR EF LTLSIP+ G + A N + Q ++ E+ L++++ + +
Sbjct: 276 QRNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLDQNLRQQIQQVEI 335
Query: 421 QQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQS 480
+ Q I A++ V Q+ F G A+ S L + N A+ N + +YW+
Sbjct: 336 EWQQITMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDAHNSLFRAKHNLASRWYSYWRQ 395
Query: 481 YFKLRKLT 488
+L KLT
Sbjct: 396 RIELLKLT 403
>gi|147673121|ref|YP_001217116.1| putative outer membrane protein TolC [Vibrio cholerae O395]
gi|146315004|gb|ABQ19543.1| putative outer membrane protein TolC [Vibrio cholerae O395]
Length = 419
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 18/308 (5%)
Query: 186 AQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAE 245
AQ E + A +F LA AQ+ LA++ +++ +L I E++Y I E
Sbjct: 109 AQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVE 168
Query: 246 LFTLKLDRVNAQNSFQNA--EIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDD 303
L L++++++ +++ NA E+ KR+ ++ + + ++ P F+ DD
Sbjct: 169 LEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTHTPTPSWPFSAELDD 228
Query: 304 ALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPS 363
L A+ ++P L + +++ SQ + K + ++ + AS G Y++
Sbjct: 229 WLTAAKDHSPELLIAIQKVAISQ--IAKQQSQSGYYPSLRASAG-----------YQDGD 275
Query: 364 QR--EF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTM 420
QR EF LTLSIP+ G + A N + Q ++ E+ L++++ + +
Sbjct: 276 QRNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLDQNLRQQIQQVEI 335
Query: 421 QQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQS 480
+ Q I A++ V Q+ F G A+ S L + N A+ N + +YW+
Sbjct: 336 EWQQITMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDAHNSLFRAKHNLASRWYSYWRQ 395
Query: 481 YFKLRKLT 488
+L KLT
Sbjct: 396 RIELLKLT 403
>gi|153830369|ref|ZP_01983036.1| putative outer membrane protein TolC [Vibrio cholerae 623-39]
gi|148874141|gb|EDL72276.1| putative outer membrane protein TolC [Vibrio cholerae 623-39]
Length = 419
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 18/308 (5%)
Query: 186 AQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAE 245
AQ E + A +F LA AQ+ LA++ +++ +L I E++Y I E
Sbjct: 109 AQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVE 168
Query: 246 LFTLKLDRVNAQNSFQNA--EIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDD 303
L L++++++ +++ NA E+ KR+ ++ + + ++ P F+ DD
Sbjct: 169 LEELRVNQLDEESTILNAKAELETKRSQLSILINASAPQVDEVDTHTPTPSWPFSAELDD 228
Query: 304 ALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPS 363
L A+ ++P L + +++ SQ + K + ++ + AS G Y++
Sbjct: 229 WLTAAKDHSPELLIAIQKVAISQ--IAKQQSQSGYYPSLRASAG-----------YQDGD 275
Query: 364 QR--EF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTM 420
QR EF LTLSIP+ G + A N + Q ++ E+ L++++ + +
Sbjct: 276 QRNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLDQNLRQQIQQVEI 335
Query: 421 QQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQS 480
+ Q I A++ V Q+ F G A+ S L + N A+ N + +YW+
Sbjct: 336 EWQQITMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDAHNSLFRAKHNLASRWYSYWRQ 395
Query: 481 YFKLRKLT 488
+L KLT
Sbjct: 396 RIELLKLT 403
>gi|119116625|dbj|BAF40889.1| hypothetical protein [Vibrio cholerae bv. albensis]
Length = 419
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 74/308 (24%), Positives = 140/308 (45%), Gaps = 18/308 (5%)
Query: 186 AQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAE 245
AQ E + A +F LA AQ+ LA++ +++ +L I E++Y I E
Sbjct: 109 AQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVE 168
Query: 246 LFTLKLDRVNAQNSFQNA--EIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDD 303
L L++++++ +++ NA E+ KR+ ++ + + ++ P F+ DD
Sbjct: 169 LEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTHTPTPSWPFSAELDD 228
Query: 304 ALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPS 363
L A+ ++P L + +++ SQ + K + ++ + AS G Y++
Sbjct: 229 WLTAAKDHSPELLIAIQKVAISQ--IAKQQSQSGYYPSLRASAG-----------YQDGD 275
Query: 364 QR--EF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTM 420
QR EF LTLSIP+ G + A N + Q ++ E+ L++++ + +
Sbjct: 276 QRNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLDQNLRQQIQQVEI 335
Query: 421 QQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQS 480
+ Q I A++ V Q+ F G A+ S L + N A+ N + +YW+
Sbjct: 336 EWQQITMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDAHNSLFRAKHNLASRWYSYWRQ 395
Query: 481 YFKLRKLT 488
+L KLT
Sbjct: 396 RIELLKLT 403
>gi|15641573|ref|NP_231205.1| outer membrane protein TolC, putative [Vibrio cholerae O1 biovar
eltor str. N16961]
gi|116188609|ref|ZP_01478379.1| hypothetical protein VchoM_02002487 [Vibrio cholerae MO10]
gi|121591085|ref|ZP_01678396.1| outer membrane protein TolC, putative [Vibrio cholerae 2740-80]
gi|121728479|ref|ZP_01681504.1| outer membrane protein TolC, putative [Vibrio cholerae V52]
gi|153222727|ref|ZP_01953404.1| outer membrane protein TolC, putative [Vibrio cholerae MAK 757]
gi|153823382|ref|ZP_01976049.1| outer membrane protein TolC, putative [Vibrio cholerae B33]
gi|9656073|gb|AAF94719.1| outer membrane protein TolC, putative [Vibrio cholerae O1 biovar
eltor str. N16961]
gi|121547061|gb|EAX57199.1| outer membrane protein TolC, putative [Vibrio cholerae 2740-80]
gi|121629254|gb|EAX61691.1| outer membrane protein TolC, putative [Vibrio cholerae V52]
gi|124118693|gb|EAY37436.1| outer membrane protein TolC, putative [Vibrio cholerae MAK 757]
gi|125618634|gb|EAZ47170.1| outer membrane protein TolC, putative [Vibrio cholerae MO10]
gi|126519100|gb|EAZ76323.1| outer membrane protein TolC, putative [Vibrio cholerae B33]
Length = 419
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 75/308 (24%), Positives = 139/308 (45%), Gaps = 18/308 (5%)
Query: 186 AQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAE 245
AQ E + A +F LA AQ+ LA++ +++ +L I E++Y I E
Sbjct: 109 AQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVE 168
Query: 246 LFTLKLDRVNAQNSFQN--AEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDD 303
L L++++++ +++ N AE+ KR+ ++ + + ++ Q P F+ DD
Sbjct: 169 LEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDD 228
Query: 304 ALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPS 363
L A+ ++P L + +++ SQ + K + ++ + AS G Y++
Sbjct: 229 WLTAAKDHSPELLIAIQKVAISQ--IAKQQSQSGYYPSLRASAG-----------YQDGD 275
Query: 364 QR--EF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTM 420
QR EF LTLSIP+ G + A N + Q ++ E+ L +++ + +
Sbjct: 276 QRNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEI 335
Query: 421 QQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQS 480
+ Q I A++ V Q+ F G A+ S L N A+ N + +YW+
Sbjct: 336 EWQQITMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQ 395
Query: 481 YFKLRKLT 488
+L KLT
Sbjct: 396 RIELLKLT 403
>gi|116219118|ref|ZP_01484645.1| hypothetical protein VchoV5_02002758 [Vibrio cholerae V51]
gi|125622119|gb|EAZ50441.1| Outer membrane protein [Vibrio cholerae V51]
Length = 305
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 69/289 (23%), Positives = 136/289 (47%), Gaps = 18/289 (6%)
Query: 205 FFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNA- 263
+F LA AQ+ LA++ +++ +L I E++Y I EL L++++++ +++ NA
Sbjct: 14 YFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQ 73
Query: 264 -EIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDDALMHARQNNPRYLESKRQL 322
E+ KR+ ++ + + ++ P F+ D+ L A+ ++P L + +++
Sbjct: 74 AELETKRSQLSILINASAPQVDEVDTHTPTPSWPFSAELDNWLTAAKDHSPELLIAIQKV 133
Query: 323 LESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQR--EF-VELTLSIPLVDW 379
SQ + K + ++ + AS G Y++ QR EF LTLSIP+
Sbjct: 134 AISQ--IAKQQSQSGYYPSLRASAG-----------YQDGDQRNGEFNASLTLSIPIDLN 180
Query: 380 GVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAY 439
G + A N + Q ++ E+ L++++ + ++ Q I A++ V +
Sbjct: 181 GATRSDNEKAHLNWLMAQQQQRKVEIGLDQNLRQQIQQVEIEWQQITMADQQVTHREKVL 240
Query: 440 EQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKLRKLT 488
Q+ F G A+ S L + N A+ N + +YW+ +L KLT
Sbjct: 241 RSKQQLFDAGLAEASDLIDAHNSLFRAKHNLASRWYSYWRQRIELLKLT 289
>gi|153824887|ref|ZP_01977554.1| outer membrane protein TolC, putative [Vibrio cholerae MZO-2]
gi|149741605|gb|EDM55635.1| outer membrane protein TolC, putative [Vibrio cholerae MZO-2]
Length = 419
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 72/308 (23%), Positives = 139/308 (45%), Gaps = 18/308 (5%)
Query: 186 AQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAE 245
AQ E + A + LA AQ+ LA++ +++ +L I E++Y I E
Sbjct: 109 AQLERNQAYNQLAHQLLSAYIALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVE 168
Query: 246 LFTLKLDRVNAQNSFQNA--EIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDD 303
L L++++++ +++ NA E+ KR+ ++ + + ++ P F+ DD
Sbjct: 169 LEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTHTPTPSWPFSAELDD 228
Query: 304 ALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPS 363
L A+ ++P L + +++ SQ + K + ++ + AS G Y++
Sbjct: 229 WLTAAKDHSPELLIAIQKVAISQ--IAKQQSQSGYYPSLRASAG-----------YQDGD 275
Query: 364 QR--EF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTM 420
QR EF LTLSIP+ G + A + + Q ++ E+ L++++ + +
Sbjct: 276 QRNGEFNAGLTLSIPIDLNGATRSDNEKAHLSWLMAQQQQRKVEIGLDQNLRQQIQQVEI 335
Query: 421 QQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQS 480
+ Q I A++ V Q+ F G A+ S L + N A+ N + +YW+
Sbjct: 336 EWQQITMADQQVTHRDKVLRSKQQLFDAGLAEASDLIDAHNSLFRAKHNLASRWYSYWRQ 395
Query: 481 YFKLRKLT 488
+L KLT
Sbjct: 396 RIELLKLT 403
>gi|149908116|ref|ZP_01896780.1| outer membrane protein TolC [Moritella sp. PE36]
gi|149808658|gb|EDM68591.1| outer membrane protein TolC [Moritella sp. PE36]
Length = 435
Score = 63.9 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 72/311 (23%), Positives = 131/311 (42%), Gaps = 16/311 (5%)
Query: 179 APLKFEKAQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKI 238
A LKF+++ +L A+L + + DLA +Q ++ LA++ + K+ I E +YK
Sbjct: 119 AQLKFKQSHNDLAARLIKA-------YLDLAQSQGDFRLAQQKFTEGTKMLHITELRYKA 171
Query: 239 ASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNFDKNTKITLQLPDY--PKT 296
+I L ++ + V+ + + + L A +NF NT + ++ PK
Sbjct: 172 GAIHSTALEDMRANHVDERAEILANQSNVADKKAILIALINFAPNTVNEIDTTNFMPPKL 231
Query: 297 FAISTDDALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSAS-IGFNQIANTF 355
S D L A N+P L +K+ + + + D+ + AG+ + IG +
Sbjct: 232 IVSSEKDWLKLANNNSPELLVAKQNIRVIEFEKDQAK------AGYYPTVIGSFGYNGSH 285
Query: 356 RDVYRNPSQREFVELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTV 415
+ N L LS+PL G + AK + + A+ E+R+ I
Sbjct: 286 NNNGNNGDDTLNASLLLSVPLDLNGSTSANVDRAKLRIKRAKEEARAVEIRINNTISNRY 345
Query: 416 GDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALK 475
++ Q I A++ VE + + + Q + G AD S + + NR ++ +
Sbjct: 346 SQLSIDWQRIEIAQQQVESRQRSLQTKQVVYDAGLADASDVIDAHNRLFGSKNALQSRFY 405
Query: 476 NYWQSYFKLRK 486
YWQ L K
Sbjct: 406 QYWQHRISLLK 416
>gi|153818884|ref|ZP_01971551.1| outer membrane protein TolC, putative [Vibrio cholerae NCTC 8457]
gi|126510554|gb|EAZ73148.1| outer membrane protein TolC, putative [Vibrio cholerae NCTC 8457]
Length = 370
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 64/272 (23%), Positives = 123/272 (45%), Gaps = 18/272 (6%)
Query: 186 AQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAE 245
AQ E + A +F LA AQ+ LA++ +++ +L I E++Y I E
Sbjct: 109 AQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVE 168
Query: 246 LFTLKLDRVNAQNSFQN--AEIRLKRAMFALAAYLNFDKNTKITLQLPDYPKTFAISTDD 303
L L++++++ +++ N AE+ KR+ ++ + + ++ Q P F+ DD
Sbjct: 169 LEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDD 228
Query: 304 ALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPS 363
L A+ ++P L + +++ SQ + K + ++ + AS G Y++
Sbjct: 229 WLTAAKDHSPELLIAIQKVAISQ--IAKQQSQSGYYPSLRASAG-----------YQDGD 275
Query: 364 QR--EF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTM 420
QR EF LTLSIP+ G + A N + Q ++ E+ L +++ + +
Sbjct: 276 QRNGEFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEI 335
Query: 421 QQQMIRSAEEAVELAKVAYEQTQERFIIGKAD 452
+ Q I A++ V Q+ F G A+
Sbjct: 336 EWQQITMADQQVTHRDKVLRSKQQLFDAGLAE 367
>gi|83745824|ref|ZP_00942881.1| Type I secretion outer membrane protein [Ralstonia solanacearum
UW551]
gi|83727514|gb|EAP74635.1| Type I secretion outer membrane protein [Ralstonia solanacearum
UW551]
Length = 494
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 73/359 (20%), Positives = 141/359 (39%), Gaps = 6/359 (1%)
Query: 128 LTGGTFSIHTGLGYIQNFGKNEKSQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQ 187
LTG ++HT + N S + V +G + L + R+ A L A
Sbjct: 122 LTGSLSAMHTRNEFPDRPEANTSSDGHT--VYLGLSWRLFDFGARSANREAANLMLAAAI 179
Query: 188 KELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELF 247
A L++ G +FD QA + E E + + + GQ++
Sbjct: 180 SGHDAALQKVLAAVVGAYFDALTQQAAMQARTEATRLARDTVEATERRERRGAAGQSDTL 239
Query: 248 TLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNFDKNTKITL-QLPDYPKTFAIST-DDAL 305
+ AQ + Q A ++A+ AL L T L +L D + ++ L
Sbjct: 240 QARTAFAKAQLAEQRATADFRKALSALGYALGLPPGTAFQLAELNDATDSQSVGELARWL 299
Query: 306 MHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQR 365
A +P ++ Q ++ ++DKTR E L F+A+ N N RN
Sbjct: 300 DEAAARHPGIASARAQWDAAKARVDKTRAEGLPTVDFTANFYQNGYPNQGLQSTRN--NV 357
Query: 366 EFVELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMI 425
V +TL+IPL + R + A++ + + + ++ D+I D +
Sbjct: 358 STVGVTLTIPLFEGFSRTYKIRGAEAQAEQSEAQYEDTKNQILSDVIKVHADAVAAVDNL 417
Query: 426 RSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYIAALKNYWQSYFKL 484
++++ + A+ + +++R+ G AD+ L + + +A + + L + + +L
Sbjct: 418 QASDVLIHSAQASMVSSEKRYAKGAADVLELLSTQSALTDAMQERVRCLSEWRAARLRL 476
>gi|77459866|ref|YP_349373.1| RND efflux system, outer membrane lipoprotein, NodT [Pseudomonas
fluorescens PfO-1]
gi|77383869|gb|ABA75382.1| RND efflux system, outer membrane lipoprotein, NodT [Pseudomonas
fluorescens PfO-1]
Length = 489
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 61/298 (20%), Positives = 122/298 (40%), Gaps = 7/298 (2%)
Query: 151 SQFSSIPVSIGYNQELIGYNRFRWERKIAPLKFEKAQKELIAQLEETAEVAAGYFFDLAM 210
S +I YN +L G R WE + + + ++ AQL A+VA Y DL
Sbjct: 134 STVRNISAGFNYNFDLWGGQRDAWEAALGQARAAEVDRQ-AAQLTLAADVARAYS-DLGQ 191
Query: 211 AQAEYELAEENRSNTEKLYRIGEEKYKIASIGQAELFTLKLDRVNAQNSFQNAEIRLKRA 270
A Y+LA E+ T+++ + + + Q + + +++ S +AE RL A
Sbjct: 192 AHIVYDLANEDLKRTKQMLDLSQRRLSSGIDSQYQFQQTQSLEASSEASLIDAEKRLNSA 251
Query: 271 MFALAAYLNFDKNTKITLQLPDYPKTFAISTDDAL-MHARQNNPRYLESKRQLLESQQKL 329
ALA L + + P + A++ L P + ++ ++ + + +
Sbjct: 252 KIALAVLLGKGPDRGNEIARPKVLQASAVALPSVLPAELLGRRPDLVAARWRVEAASKDI 311
Query: 330 DKTRKEALFNAGFSASIGFNQIANTFRDVYRNPSQREF-VELTLSIPLVDWGVRKGQYNM 388
D + N SAS G + D + R F + T+S+P+ D G + +
Sbjct: 312 DSAKTRFYPNLNLSASAGAESL---LGDAMFGSASRFFNIAPTISVPIFDGGRLRANLDA 368
Query: 389 AKSNLNIVQLTAQQDELRLEEDIIMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERF 446
++ ++ + ++ D+ T+ + I + + A E+A+ +Y +R+
Sbjct: 369 RDADYDLAVAQYNKSLVKALGDVSDTINQLRDIGRQIGAQQHATEIAQDSYNTVVQRY 426
>gi|153837791|ref|ZP_01990458.1| TolC [Vibrio parahaemolyticus AQ3810]
gi|149748812|gb|EDM59651.1| TolC [Vibrio parahaemolyticus AQ3810]
Length = 423
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 71/313 (22%), Positives = 135/313 (43%), Gaps = 21/313 (6%)
Query: 179 APLKFEKAQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKI 238
A + KAQ EL E A+ + D+A AQ + +LA+ ++L I E++Y+
Sbjct: 104 ANANYLKAQLELSQSHNELAQKLLTAYLDVASAQGDLKLAQSKLEEGKELLNIIEKRYRA 163
Query: 239 ASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNF--DKNTKITLQLPDYPKT 296
+ ++ ++ ++V+ Q S NA+ L+ LAA +N ++ +I P
Sbjct: 164 GKVKSVDVEEMRANQVSEQASILNAKADLEVKKAELAALINQMPERVDQIRTDSLIQPPM 223
Query: 297 FAISTDDALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFR 356
S + L A+ ++P L + + + S+ K + + S+G++ N
Sbjct: 224 LVDSLEQWLKLAKDSSPELLVAAQMVKASE--FAKDSAKGGYYPTVKGSVGYSDGDNR-- 279
Query: 357 DVYRNPSQREF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDI---- 411
S EF ++LS+P+ G + + + A N+ L+A+QD R+E DI
Sbjct: 280 ------SNGEFNAGISLSLPIDLNGAVRAKVDEASLNI----LSAKQDMRRVEIDIQKRV 329
Query: 412 IMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYI 471
I + + A E VE + ++ + G ++S + + N EA+ +
Sbjct: 330 IQQFTQVDINWNQVLIANELVESRARVLQSKEKLYDAGLLEVSEVISAHNSLFEAKNSLQ 389
Query: 472 AALKNYWQSYFKL 484
L +YW+ L
Sbjct: 390 TNLYSYWRKRIGL 402
>gi|91226914|ref|ZP_01261511.1| putative outer membrane protein TolC [Vibrio alginolyticus 12G01]
gi|91188877|gb|EAS75162.1| putative outer membrane protein TolC [Vibrio alginolyticus 12G01]
Length = 423
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 71/313 (22%), Positives = 134/313 (42%), Gaps = 21/313 (6%)
Query: 179 APLKFEKAQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKI 238
A + KAQ EL E A+ + D+A AQ + +LA+ ++L I E++Y+
Sbjct: 104 ANANYLKAQLELSQSHNELAQKLLTAYLDVASAQGDLKLAQSKLEEGKELLNIIEKRYRA 163
Query: 239 ASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNF--DKNTKITLQLPDYPKT 296
+ ++ ++ ++V+ Q S NA+ L+ LAA +N + +I P
Sbjct: 164 GKVKSVDVEEMRANQVSEQASILNAKADLEVKKAELAALINQMPESVDQIRTDSLIQPPM 223
Query: 297 FAISTDDALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFR 356
S + L A+ ++P L + + + S+ K + + S+G++ N
Sbjct: 224 LVDSQEQWLKLAKDSSPELLVAAQMVKASE--FAKDSAKGGYYPTVKGSVGYSDGDNR-- 279
Query: 357 DVYRNPSQREF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDI---- 411
S EF ++LS+P+ G + + + A N+ L+A+QD R+E DI
Sbjct: 280 ------SNGEFNAGISLSLPIDLNGAVRAKVDEASLNI----LSAKQDMRRVEIDIQKRV 329
Query: 412 IMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYI 471
I + + A E VE + ++ + G ++S + + N EA+ +
Sbjct: 330 IQQFTQVDINWNQVLIANELVESRARVLQSKEKLYDAGLLEVSEVISAHNSLFEAKNSLQ 389
Query: 472 AALKNYWQSYFKL 484
L +YW+ L
Sbjct: 390 TNLYSYWRKRIGL 402
>gi|116185526|ref|ZP_01475434.1| hypothetical protein VEx2w_02001973 [Vibrio sp. Ex25]
gi|151937843|gb|EDN56690.1| outer membrane efflux protein [Vibrio sp. Ex25]
Length = 423
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 71/313 (22%), Positives = 134/313 (42%), Gaps = 21/313 (6%)
Query: 179 APLKFEKAQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKI 238
A + KAQ EL E A+ + D+A AQ + +LA+ ++L I E++Y+
Sbjct: 104 ANANYLKAQLELSQSHNELAQKLLTAYLDVASAQGDLKLAQSKLEEGKELLNIIEKRYRA 163
Query: 239 ASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNF--DKNTKITLQLPDYPKT 296
+ ++ ++ ++V+ Q S NA+ L+ LAA +N + +I P
Sbjct: 164 GKVKSVDVEEMRANQVSEQASILNAKADLEVKKAELAALINQMPESVDQIRTDSLIQPPM 223
Query: 297 FAISTDDALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFR 356
S + L A+ ++P L + + + S+ K + + S+G++ N
Sbjct: 224 LVDSQEQWLKLAKDSSPELLVAAQMVKASE--FAKDSAKGGYYPTVKGSVGYSDGDNR-- 279
Query: 357 DVYRNPSQREF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDI---- 411
S EF ++LS+P+ G + + + A N+ L+A+QD R+E DI
Sbjct: 280 ------SNGEFNAGISLSLPIDLNGAVRAKVDEASLNI----LSAKQDMRRVEIDIQKRV 329
Query: 412 IMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYI 471
I + + A E VE + ++ + G ++S + + N EA+ +
Sbjct: 330 IQQFTQVDINWNQVLIANELVESRARVLQSKEKLYDAGLLEVSEVISAHNSLFEAKNSLQ 389
Query: 472 AALKNYWQSYFKL 484
L +YW+ L
Sbjct: 390 TNLYSYWRKRIGL 402
>gi|72536042|gb|AAZ73116.1| TolC [Vibrio parahaemolyticus]
Length = 423
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 71/313 (22%), Positives = 134/313 (42%), Gaps = 21/313 (6%)
Query: 179 APLKFEKAQKELIAQLEETAEVAAGYFFDLAMAQAEYELAEENRSNTEKLYRIGEEKYKI 238
A + KAQ EL E A+ + D+A AQ + +LA+ ++L I E++Y+
Sbjct: 104 ANANYLKAQLELSQSHNELAQKLLTAYLDVASAQGDLKLAQSKLEEGKELLNIIEKRYRA 163
Query: 239 ASIGQAELFTLKLDRVNAQNSFQNAEIRLKRAMFALAAYLNF--DKNTKITLQLPDYPKT 296
+ ++ ++ ++V+ Q S NA+ L+ LAA +N + +I P
Sbjct: 164 GKVKSVDVEEMRANQVSEQASILNAKADLEVKKAELAALINQMPESVDQIRTDSLIQPPM 223
Query: 297 FAISTDDALMHARQNNPRYLESKRQLLESQQKLDKTRKEALFNAGFSASIGFNQIANTFR 356
S + L A+ ++P L + + + S+ K + + S+G++ N
Sbjct: 224 LVDSQEQWLKLAKDSSPELLVAAQMVKASE--FAKDSAKGGYYPTVKGSVGYSDGDNR-- 279
Query: 357 DVYRNPSQREF-VELTLSIPLVDWGVRKGQYNMAKSNLNIVQLTAQQDELRLEEDI---- 411
S EF ++LS+P+ G + + + A N+ L+A+QD R+E DI
Sbjct: 280 ------SNGEFNAGISLSLPIDLNGAVRAKVDEASLNI----LSAKQDMRRVEIDIQKRV 329
Query: 412 IMTVGDFTMQQQMIRSAEEAVELAKVAYEQTQERFIIGKADISSLTLSTNRRQEAQRNYI 471
I + + A E VE + ++ + G ++S + + N EA+ +
Sbjct: 330 IQQFTQVDINWNQVLIANELVESRARVLQSKEKLYDAGLLEVSEVISAHNSLFEAKNSLQ 389
Query: 472 AALKNYWQSYFKL 484
L +YW+ L
Sbjct: 390 TNLYSYWRKRIGL 402
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.319 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,668,055,648
Number of Sequences: 5470121
Number of extensions: 65891290
Number of successful extensions: 186485
Number of sequences better than 1.0e-05: 100
Number of HSP's better than 0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 186303
Number of HSP's gapped (non-prelim): 139
length of query: 507
length of database: 1,894,087,724
effective HSP length: 137
effective length of query: 370
effective length of database: 1,144,681,147
effective search space: 423532024390
effective search space used: 423532024390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)