Vibrio fischeri ES114 chromosome I

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174278-174377 (1-100) [174378-174477 (101-200)] 174478-174577 (201-300) 174578-174677 (301-400) 174678-174777 (401-500)
174778-174877 (501-600) 174878-174977 (601-700) 174978-175077 (701-800) 175078-175177 (801-900) 175178-175277 (901-1000)
175278-175377 (1001-1100) 175378-175477 (1101-1200) 175478-175577 (1201-1300) 175578-175677 (1301-1400) 175678-175777 (1401-1500)
175778-175877 (1501-1600) 175878-175977 (1601-1700) 175978-176077 (1701-1800) 176078-176177 (1801-1900) 176178-176277 (1901-2000)
176278-176377 (2001-2100) 176378-176477 (2101-2200) 176478-176577 (2201-2300) 176578-176677 (2301-2400) 176678-176777 (2401-2500)
176778-176852 (2501-2575)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
174378 hypothetical VF0101 D-tyrosyl-tRNA deacylase
Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine
genbank 59710708 YP_203484.1 144 119748 120182
174379 hypothetical VF0102 acetyltransferase genbank 59710709 YP_203485.1 299 120700 121599
174380 hypothetical VF0103 tRNA (guanosine-2'-O-)-methyltransferase genbank 59710710 YP_203486.1 229 121933 122622
174381 hypothetical VF0104 GTP pyrophosphokinase
guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase
genbank 59710711 YP_203487.1 707 122874 124997
174382 rpoZ hypothetical VF0105 DNA-directed RNA polymerase omega subunit
promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
genbank 59710712 YP_203488.1 90 125048 125320
174383 hypothetical VF0106 guanylate kinase
catalyzes the formation of GDP from GMP and ATP
genbank 59710713 YP_203489.1 207 125429 126052
174384 hypothetical VF0107 hypothetical protein genbank 59710714 YP_203490.1 141 126281 126706
174385 hypothetical VF0108 hypothetical protein genbank 59710715 YP_203491.1 126 126903 127283
174386 hypothetical VF0109 transporter, drug/metabolite exporter family genbank 59710716 YP_203492.1 310 127515 128447
174387 hypothetical VF0110 protein YicC genbank 59710717 YP_203493.1 287 128529 129392
174388 hypothetical VF0111 ribonuclease PH genbank 59710718 YP_203494.1 238 129553 130269
174389 pyrE hypothetical VF0112 orotate phosphoribosyltransferase
involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
genbank 59710719 YP_203495.1 215 130512 131159
174390 hypothetical VF0113 chromosome partitioning protein ParA genbank 59710720 YP_203496.1 254 131186 131950
174391 ompR hypothetical VF0114 osmolarity response regulator
part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of om
genbank 59710721 YP_203497.1 239 132135 132854
174392 envZ hypothetical VF0115 osmolarity sensor protein
membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR
genbank 59710722 YP_203498.1 434 133287 134591
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
174393 hypothetical VF0116 xanthine permease genbank 59710723 YP_203499.1 463 134838 136229
174394 hypothetical VF0117 competence protein F genbank 59710724 YP_203500.1 239 136593 137312
174395 hypothetical VF0118 BioH protein genbank 59710725 YP_203501.1 257 137341 138114
174396 hypothetical VF0119 hypothetical protein genbank 59710726 YP_203502.1 159 138141 138620
174397 hypothetical VF0120 transcription accessory protein
S1 RNA binding domain
genbank 59710727 YP_203503.1 771 138816 141131
174398 greB hypothetical VF0121 transcription elongation factor GreB
necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary comp
genbank 59710728 YP_203504.1 157 141359 141832
174399 hypothetical VF0122 lipid A biosynthesis lauroyl acyltransferase
Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
genbank 59710729 YP_203505.1 312 141851 142789
174400 hypothetical VF0123 Ttk protein genbank 59710730 YP_203506.1 90 142814 143086
174401 hypothetical VF0124 Ttk protein genbank 59710731 YP_203507.1 82 143155 143403
174402 hypothetical VF0125 phosphopantothenoylcysteine synthase/decarboxylase
catalyzes the conversion of 4'-phosphopantothenate to 4'-phosphopantetheine
genbank 59710732 YP_203508.1 409 143558 144787
174403 hypothetical VF0126 DNA repair protein RadC
Involved in repair of DNA damage after UV and X-ray irradiation in prokaryotes
genbank 59710733 YP_203509.1 224 145008 145682
174404 hypothetical VF0127 LSU ribosomal protein L28P genbank 59710734 YP_203510.1 78 145878 146114
174405 hypothetical VF0128 LSU ribosomal protein L33P genbank 59710735 YP_203511.1 55 146129 146296
174406 hypothetical VF0129 hypothetical protein genbank 59710736 YP_203512.1 151 146757 147212
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
174407 hypothetical VF0130 formamidopyrimidine-DNA glycosylase genbank 59710737 YP_203513.1 272 147452 148270
174408 hypothetical VF0131 phosphoglycerol transferase MdoB and related proteins, alkaline phosphatase superfamily genbank 59710738 YP_203514.1 659 148295 150274
174409 hypothetical VF0132 phosphopantetheine adenylyltransferase
catalyzes the reversible formation of dephospho-CoA transfering the adenylyl group from ATP to 4'phosphopantetheine
genbank 59710739 YP_203515.1 162 150318 150806
174410 hypothetical VF0133 glycosyltransferase genbank 59710740 YP_203516.1 342 150799 151827
174411 hypothetical VF0134 alpha-L-glycero-D-manno-heptose beta-1,4-glucosyltransferase genbank 59710741 YP_203517.1 261 151830 152615
174412 hypothetical VF0135 ADP-heptose--LPS heptosyltransferase III genbank 59710742 YP_203518.1 347 152625 153668
174413 hypothetical VF0136 3-deoxy-D-manno-octulosonic-acid kinase
catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position
genbank 59710743 YP_203519.1 234 153863 154567
174414 hypothetical VF0137 phosphoglycerol transferase MdoB and related proteins, alkaline phosphatase superfamily genbank 59710744 YP_203520.1 591 154676 156451
174415 hypothetical VF0138 3-deoxy-D-manno-octulosonic-acid transferase
Catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid
genbank 59710745 YP_203521.1 418 156619 157875
174416 hypothetical VF0139 ADP-heptose--LPS heptosyltransferase II genbank 59710746 YP_203522.1 341 157872 158897
174417 hypothetical VF0140 UDP-N-acetylglucosamine 4,6-dehydratase genbank 59710747 YP_203523.1 396 158980 160170
174418 hypothetical VF0141 UDP-bacillosamine synthetase genbank 59710748 YP_203524.1 381 160194 161339
174419 hypothetical VF0142 UDP-N-acetylglucosamine 2-epimerase (N-acetylmannosamine-forming) genbank 59710749 YP_203525.1 394 161374 162558
174420 hypothetical VF0143 N-acetylneuraminate synthase genbank 59710750 YP_203526.1 357 162566 163639
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
174421 hypothetical VF0144 sialic acid biosynthesis protein NeuD genbank 59710751 YP_203527.1 214 163632 164276
174422 hypothetical VF0145 mannose-1-phosphate guanyltransferase genbank 59710752 YP_203528.1 352 164292 165350
174423 hypothetical VF0146 oxidoreductase genbank 59710753 YP_203529.1 326 165356 166336
174424 hypothetical VF0147 acylneuraminate cytidylyltransferase genbank 59710754 YP_203530.1 229 166352 167041
174425 hypothetical VF0148 flagellin modification protein A genbank 59710755 YP_203531.1 256 167041 167811
174426 hypothetical VF0149 glycosyltransferase genbank 59710756 YP_203532.1 389 167820 168989
174427 hypothetical VF0150 hypothetical protein genbank 59710757 YP_203533.1 325 169005 169982
174428 hypothetical VF0151 O-antigen ligase genbank 59710758 YP_203534.1 410 169986 171218
174429 hypothetical VF0152 ADP-L-glycero-D-manno-heptose-6-epimerase genbank 59710759 YP_203535.1 313 171246 172187
174430 hypothetical VF0153 cleavage and polyadenylation genbank 59710760 YP_203536.1 490 172855 174327
174431 hypothetical VF0154 hypothetical protein genbank 59710761 YP_203537.1 117 174413 174766
174432 hypothetical VF0155 transcriptional regulator, TetR family genbank 59710762 YP_203538.1 214 174889 175533
174433 hypothetical VF0156 WbfB protein genbank 59710763 YP_203539.1 560 175724 177406
174434 hypothetical VF0157 WbfB protein genbank 59710764 YP_203540.1 131 177584 177979
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
174435 hypothetical VF0158 hypothetical protein genbank 59710765 YP_203541.1 253 177983 178744
174436 hypothetical VF0159 hypothetical protein genbank 59710766 YP_203542.1 85 178787 179044
174437 hypothetical VF0160 WbfD protein genbank 59710767 YP_203543.1 122 179092 179460
174438 hypothetical VF0161 hypothetical protein genbank 59710768 YP_203544.1 82 179584 179832
174439 hypothetical VF0162 putative polysaccharide export protein YccZ precursor genbank 59710769 YP_203545.1 383 180306 181457
174440 hypothetical VF0163 hypothetical protein genbank 59710770 YP_203546.1 116 181618 181968
174441 hypothetical VF0164 Protein tyrosine phosphatase genbank 59710771 YP_203547.1 146 182323 182763
174442 hypothetical VF0165 chain length regulator (capsular polysaccharide biosynthesis)
tyrosine-protein kinase (capsular polysaccharide biosynthesis)
genbank 59710772 YP_203548.1 720 183048 185210
174443 hypothetical VF0166 dTDP-glucose 4,6-dehydratase genbank 59710773 YP_203549.1 364 185292 186386
174444 hypothetical VF0167 Glucose-1-phosphate thymidylyltransferase genbank 59710774 YP_203550.1 299 186386 187285
174445 hypothetical VF0168 dTDP-4-dehydrorhamnose 3,5-epimerase genbank 59710775 YP_203551.1 185 187285 187842
174446 hypothetical VF0169 hypothetical protein genbank 59710776 YP_203552.1 271 187844 188659
174447 hypothetical VF0170 flippase
oligosaccharide translocase
genbank 59710777 YP_203553.1 417 188663 189916
174448 hypothetical VF0171 hypothetical protein genbank 59710778 YP_203554.1 439 189938 191257
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
174449 hypothetical VF0172 O-acetyltransferase
cell wall biosynthesis
genbank 59710779 YP_203555.1 210 191238 191870
174450 hypothetical VF0173 hypothetical protein genbank 59710780 YP_203556.1 315 191875 192822
174451 hypothetical VF0174 beta-D-GlcNAc beta-1,3-galactosyltransferase genbank 59710781 YP_203557.1 330 193954 194946
174452 hypothetical VF0175 glycosyltransferase genbank 59710782 YP_203558.1 271 194922 195737
174453 hypothetical VF0176 2-dehydro-3-deoxyphosphooctonate aldolase
catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
genbank 59710783 YP_203559.1 265 195750 196547
174454 hypothetical VF0177 3-deoxy-manno-octulosonate-8-phosphatase genbank 59710784 YP_203560.1 187 196550 197113
174455 hypothetical VF0178 3-deoxy-manno-octulosonate cytidylyltransferase
catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
genbank 59710785 YP_203561.1 250 197117 197869
174456 hypothetical VF0179 arabinose-5-phosphate isomerase genbank 59710786 YP_203562.1 310 197870 198802
174457 hypothetical VF0180 undecaprenyl-phosphate alpha-N-acetylglucosaminephosphotransferase genbank 59710787 YP_203563.1 363 199048 200139
174458 hypothetical VF0181 CDP-6-deoxy-delta-3,4-glucoseen reductase
catalyzes the formation of 3.6-dideoxy-D-glycero-D-glycero-4-hexulose
genbank 59710788 YP_203564.1 321 200714 201679
174459 hypothetical VF0182 glucose-1-phosphate cytidylyltransferase genbank 59710789 YP_203565.1 257 201702 202475
174460 hypothetical VF0183 CDP-glucose 4,6-dehydratase genbank 59710790 YP_203566.1 360 202479 203561
174461 hypothetical VF0184 CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase genbank 59710791 YP_203567.1 437 203561 204874
174462 hypothetical VF0185 acetolactate synthase large subunit genbank 59710792 YP_203568.1 566 204890 206590
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
174463 hypothetical VF0186 dTDP-glucose 4,6-dehydratase genbank 59710793 YP_203569.1 340 206568 207590
174464 hypothetical VF0187 hypothetical protein genbank 59710794 YP_203570.1 309 207664 208593
174465 hypothetical VF0188 hypothetical protein genbank 59710795 YP_203571.1 329 208628 209617
174466 hypothetical VF0189 hypothetical protein genbank 59710796 YP_203572.1 425 209604 210881
174467 hypothetical VF0190 hypothetical protein genbank 59710797 YP_203573.1 367 210871 211974
174468 hypothetical VF0191 UDP-2-acetamido-2, 6-dideoxy-alpha-D-xylo-4-hexulose 3,5-epimerase
UDP-N-acetylglucosamine 4,6-dehydratase
genbank 59710798 YP_203574.1 345 212052 213089
174469 hypothetical VF0192 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase genbank 59710799 YP_203575.1 367 213089 214192
174470 hypothetical VF0193 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 2-epimerase genbank 59710800 YP_203576.1 376 214202 215332
174471 hypothetical VF0194 hypothetical protein genbank 59710801 YP_203577.1 414 215301 216545
174472 hypothetical VF0195 UDP-N-acetyl-D-quinovosamine 4-epimerase genbank 59710802 YP_203578.1 303 216542 217453
174473 hypothetical VF0196 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase genbank 59710803 YP_203579.1 182 217450 217998
174474 hypothetical VF0197 UDP-D-quinovosamine 4-dehydrogenase
UDP-N-acetylglucosamine 4,6-dehydratase
genbank 59710804 YP_203580.1 635 218013 219920
174475 hypothetical VF0198 UDP-glucose 6-dehydrogenase genbank 59710805 YP_203581.1 150 220254 220706
174476 hypothetical VF0199 hypothetical protein genbank 59710806 YP_203582.1 242 220693 221421
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
174477 hypothetical VF0200 acetyltransferase genbank 59710807 YP_203583.1 317 221630 222583


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