BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SGO_0092
(245 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157074515|gb|ABV09198.1| conserved hypothetical protein ... 465 e-130
gi|125719116|ref|YP_001036249.1| SPX domain-like protein, p... 294 3e-78
gi|125717666|ref|YP_001034799.1| SPX domain-like protein, p... 187 5e-46
gi|89893962|ref|YP_517449.1| hypothetical protein DSY1216 [... 183 7e-45
gi|146318801|ref|YP_001198513.1| SPX domain-containing prot... 176 1e-42
gi|81096754|ref|ZP_00875086.1| conserved hypothetical prote... 174 3e-42
gi|146321010|ref|YP_001200721.1| SPX domain-containing prot... 174 5e-42
gi|24380293|ref|NP_722248.1| hypothetical protein SMU.1945 ... 169 1e-40
gi|125972762|ref|YP_001036672.1| hypothetical protein Cthe_... 135 3e-30
gi|153814041|ref|ZP_01966709.1| hypothetical protein RUMTOR... 135 3e-30
gi|150389769|ref|YP_001319818.1| hypothetical protein Amet_... 126 9e-28
gi|150388149|ref|YP_001318198.1| hypothetical protein Amet_... 101 4e-20
gi|157075662|gb|ABV10345.1| conserved hypothetical protein ... 100 7e-20
gi|20091046|ref|NP_617121.1| hypothetical protein MA2205 [M... 95 3e-18
gi|157075873|gb|ABV10556.1| conserved hypothetical protein ... 92 3e-17
gi|118468894|ref|YP_890155.1| hypothetical protein MSMEG_59... 81 6e-14
gi|19551308|ref|NP_599310.1| hypothetical protein NCgl0057 ... 75 4e-12
gi|145294119|ref|YP_001136940.1| hypothetical protein cgR_0... 74 7e-12
gi|42522397|ref|NP_967777.1| hypothetical protein Bd0821 [B... 68 4e-10
gi|91201424|emb|CAJ74484.1| hypothetical protein [Candidatu... 62 3e-08
gi|106886531|ref|ZP_01353869.1| conserved hypothetical prot... 54 8e-06
>gi|157074515|gb|ABV09198.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
substr. CH1]
Length = 245
Score = 465 bits (1197), Expect = e-130, Method: Composition-based stats.
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MAKKTFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRE 60
MAKKTFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRE
Sbjct: 1 MAKKTFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRE 60
Query: 61 SLEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRGQ 120
SLEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRGQ
Sbjct: 61 SLEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRGQ 120
Query: 121 TDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSLLD 180
TDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSLLD
Sbjct: 121 TDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSLLD 180
Query: 181 GKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKKTTDYKGVVNH 240
GKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKKTTDYKGVVNH
Sbjct: 181 GKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKKTTDYKGVVNH 240
Query: 241 AKSII 245
AKSII
Sbjct: 241 AKSII 245
>gi|125719116|ref|YP_001036249.1| SPX domain-like protein, putative [Streptococcus sanguinis SK36]
gi|125499033|gb|ABN45699.1| SPX domain-like protein, putative [Streptococcus sanguinis SK36]
Length = 237
Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats.
Identities = 150/230 (65%), Positives = 180/230 (78%)
Query: 1 MAKKTFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRE 60
MA+K F+ FQRFETKY+ISKE L +LL EFE ++VED+ AYSTI+NLYYDTP++Q+IRE
Sbjct: 1 MAEKIFQHHFQRFETKYIISKETLLDLLLEFEGYLVEDERAYSTINNLYYDTPSYQLIRE 60
Query: 61 SLEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRGQ 120
SLE P F EK+R+RTY EHP EDSQVFLEIKKK +V KRR++ DLL AEAYL G+ Q
Sbjct: 61 SLENPCFDEKVRLRTYQEHPTEDSQVFLEIKKKTENLVTKRRLAADLLTAEAYLDGDYSQ 120
Query: 121 TDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSLLD 180
D QI +E+ WL + +QPMMYI YNRYSMKGIED +RIT D+DLTYR LSLL
Sbjct: 121 LTDLQIDKEMAWLTQHFGHIQPMMYIGYNRYSMKGIEDERIRITFDHDLTYRPYDLSLLA 180
Query: 181 GKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKK 230
G+HGD LLP +VIME+K+P A PLWLSEI+ +Q+ P SFSKYG AYKK
Sbjct: 181 GRHGDHLLPANHVIMEVKIPEACPLWLSEIMDRYQLSPSSFSKYGFAYKK 230
>gi|125717666|ref|YP_001034799.1| SPX domain-like protein, putative [Streptococcus sanguinis SK36]
gi|125497583|gb|ABN44249.1| SPX domain-like protein, putative [Streptococcus sanguinis SK36]
Length = 243
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 102/235 (43%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Query: 1 MAKKTFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRE 60
M +K + FQR ETKY++ + +LA L + ++ DD+A STISN+Y+D FQMI++
Sbjct: 1 MKQKQIQTNFQRIETKYILDRAMLARLEADMRPYLTADDYATSTISNVYFDNDEFQMIQD 60
Query: 61 SLEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRGQ 120
S+ + +EK+R+RTY E P +DSQVFLEIKKK ++ +K R+ ++ L+ Y+
Sbjct: 61 SIARKGGREKMRMRTYAEQPNDDSQVFLEIKKKRDEVGFKYRLVSNPLSVTNYIVNGVAD 120
Query: 121 --TDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSL 178
D ++ E++ L RY ++P M I Y+RYSM+G+ED VR+T+D ++ YR L
Sbjct: 121 HTISDDRVKAEVEQLQERYIDLKPKMVISYDRYSMRGLEDKKVRVTVDSNIRYRDYDADL 180
Query: 179 LDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKKTTD 233
G++G LL + VIMEIKVPG YP WL+ IL + + +SFSKYG AY KT +
Sbjct: 181 ASGRYGLPLLDDDKVIMEIKVPGQYPQWLAGILNKYGLEDQSFSKYGNAYLKTKE 235
>gi|89893962|ref|YP_517449.1| hypothetical protein DSY1216 [Desulfitobacterium hafniense Y51]
gi|109646474|ref|ZP_01370378.1| conserved hypothetical protein [Desulfitobacterium hafniense DCB-2]
gi|89333410|dbj|BAE83005.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|109641720|gb|EAT51274.1| conserved hypothetical protein [Desulfitobacterium hafniense DCB-2]
Length = 242
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 103/241 (42%), Positives = 145/241 (60%), Gaps = 2/241 (0%)
Query: 5 TFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRESLEK 64
T++ F+R+E KY++++E +LL + ED S I+ +Y+DTP + +I SLEK
Sbjct: 3 TYQSVFKRYEKKYMLNEEQYRHLLKRAAGKVKEDKFKQSRINTIYFDTPDYHLISASLEK 62
Query: 65 PYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRGQTDDS 124
P +KEKLR+R+Y P QVF+E+KKK + +VYKRR L A YL + + S
Sbjct: 63 PLYKEKLRLRSYGT-PHGHDQVFVELKKKFQGVVYKRRTVMSLEEAVEYLYHRKPARNAS 121
Query: 125 QICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSLLDGKHG 184
QI +EIDW + Y ++ P MYI Y R ++ GIEDP +RIT D D+ +R + L L G
Sbjct: 122 QITQEIDWFLKFYGEIGPAMYISYERLALSGIEDPGLRITFDQDILWRQDELDLSMAPWG 181
Query: 185 DKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKKTTDYKGVVNHAKSI 244
LL G +MEIK+ GA PLWL+ IL ++P SFSKYG AY T+ ++N I
Sbjct: 182 RSLLAPGQRLMEIKIAGAMPLWLAHILDELAIYPSSFSKYGKAY-LTSSAGQILNKGGKI 240
Query: 245 I 245
I
Sbjct: 241 I 241
>gi|146318801|ref|YP_001198513.1| SPX domain-containing protein involved in vacuolar polyphosphate
accumulation [Streptococcus suis 05ZYH33]
gi|145689607|gb|ABP90113.1| SPX domain-containing protein involved in vacuolar polyphosphate
accumulation [Streptococcus suis 05ZYH33]
Length = 247
Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 2/238 (0%)
Query: 1 MAKKTFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRE 60
M + + +F+R ETKY++ K+ L E ++M+ D+ A STI+N+Y+D F MI++
Sbjct: 1 MKTRIVQKQFKRKETKYIVDKKTFELLEKELRQYMMADEFATSTITNIYFDNEDFDMIQD 60
Query: 61 SLEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGN--R 118
SL K +EK+R+R YD P+E SQ FLEIKKK KI YK R++++ ++ Y+
Sbjct: 61 SLAKKNGREKIRMRVYDATPSESSQAFLEIKKKENKIGYKYRLTSNPVSVANYIENGVID 120
Query: 119 GQTDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSL 178
D ++ E++ L RY ++P MYIYY+R S KGIED VR+TID +L YR +
Sbjct: 121 STIKDDKVTSELEMLRERYGTIKPKMYIYYDRVSYKGIEDKKVRLTIDKNLLYRDYDVDA 180
Query: 179 LDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKKTTDYKG 236
++GK G LL VIME+KVP P WL +L +Q+ +SFSKYG AYK + G
Sbjct: 181 MEGKFGKNLLDPTKVIMEVKVPEERPDWLVALLEKYQIEKQSFSKYGNAYKLAHNITG 238
>gi|81096754|ref|ZP_00875086.1| conserved hypothetical protein [Streptococcus suis 89/1591]
gi|80977185|gb|EAP40736.1| conserved hypothetical protein [Streptococcus suis 89/1591]
Length = 247
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 2/238 (0%)
Query: 1 MAKKTFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRE 60
M + + +F+R ETKY++ K+ L E ++M+ D+ A STI+N+Y+D F MI++
Sbjct: 1 MKTRIVQKQFKRKETKYIVDKKTFELLEKELRQYMMADEFATSTITNIYFDNEDFDMIQD 60
Query: 61 SLEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGN--R 118
SL K +EK+R+R YD P+E SQ FLEIKKK KI YK R++++ ++ Y+
Sbjct: 61 SLAKKNGREKIRMRVYDAIPSESSQAFLEIKKKENKIGYKYRLTSNPVSVANYIENGVID 120
Query: 119 GQTDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSL 178
D ++ E++ L RY ++P MYIYY+R S KGIED VR+TID +L YR +
Sbjct: 121 STIKDDKVNSELEMLRERYGTIKPKMYIYYDRVSYKGIEDKKVRLTIDKNLLYRDYDVDA 180
Query: 179 LDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKKTTDYKG 236
++GK G LL VIME+KVP P WL +L +Q+ +SFSKYG AYK + G
Sbjct: 181 MEGKFGKNLLDPTKVIMEVKVPEERPDWLVALLEKYQIEKQSFSKYGNAYKLAHNITG 238
>gi|146321010|ref|YP_001200721.1| SPX domain-containing protein involved in vacuolar polyphosphate
accumulation [Streptococcus suis 98HAH33]
gi|145691816|gb|ABP92321.1| SPX domain-containing protein involved in vacuolar polyphosphate
accumulation [Streptococcus suis 98HAH33]
Length = 247
Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 100/238 (42%), Positives = 146/238 (61%), Gaps = 2/238 (0%)
Query: 1 MAKKTFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRE 60
M + + +F+R ETKY++ K+ L E ++M+ D+ A STI+N+Y+D F MI++
Sbjct: 1 MKTRIVQKQFKRKETKYIVDKKTFELLEKELRQYMMADEFATSTITNIYFDNEDFDMIQD 60
Query: 61 SLEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGN--R 118
SL K +EK+R+R YD P+E SQ FLEIKKK K+ YK R++++ ++ Y+
Sbjct: 61 SLAKKNGREKIRMRVYDATPSESSQAFLEIKKKENKMGYKYRLTSNPVSVANYIENGVID 120
Query: 119 GQTDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSL 178
D ++ E++ L RY ++P MYIYY+R S KGIED VR+TID +L YR +
Sbjct: 121 PTIKDDKVTSELEMLRERYGTIKPKMYIYYDRVSYKGIEDKKVRLTIDKNLLYRDYDVDA 180
Query: 179 LDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKKTTDYKG 236
++GK G LL VIME+KVP P WL +L +Q+ +SFSKYG AYK + G
Sbjct: 181 MEGKFGKNLLDPTKVIMEVKVPEERPDWLVALLEKYQIEKQSFSKYGNAYKLAHNITG 238
>gi|24380293|ref|NP_722248.1| hypothetical protein SMU.1945 [Streptococcus mutans UA159]
gi|24378306|gb|AAN59554.1|AE015018_8 hypothetical protein SMU_1945 [Streptococcus mutans UA159]
Length = 254
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 92/237 (38%), Positives = 145/237 (61%), Gaps = 7/237 (2%)
Query: 1 MAKKTFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRE 60
M +T + +FQR E KY+I + L EF++++ D +S+I+N+Y+D P FQ+I++
Sbjct: 1 MLNETIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKD 60
Query: 61 SLEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKV----RKIVYKRRISTDLLAAEAYLAG 116
S+ + EK+R+RTYD P + SQ FLEIKKK ++I YK R+++ L+ Y+
Sbjct: 61 SINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQ 120
Query: 117 ---NRGQTDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRS 173
+ D + E+ L RY+K+ P M+I+Y R+S++GIE+P +R+T D ++ YR
Sbjct: 121 GIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRH 180
Query: 174 EALSLLDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKK 230
E ++L G +G LL ++MEIKV P W+ +I HQ+ P+SFSKY AY K
Sbjct: 181 ENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLK 237
>gi|125972762|ref|YP_001036672.1| hypothetical protein Cthe_0240 [Clostridium thermocellum ATCC
27405]
gi|125712987|gb|ABN51479.1| conserved hypothetical protein [Clostridium thermocellum ATCC
27405]
Length = 260
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 89/232 (38%), Positives = 135/232 (58%), Gaps = 15/232 (6%)
Query: 10 FQRFETKYVISKEVLANLLTEFEEHMVEDDH-----AYSTISNLYYDTPTFQMIRESLEK 64
F R+E KY++ + + E+M D++ Y TI N+YYDT Q+IR S+ K
Sbjct: 9 FNRYEKKYLMDNDTYEKIKDILAEYMELDEYNKVNNTYYTICNIYYDTQDNQLIRHSVSK 68
Query: 65 PYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRG----- 119
P +KEKLR+R+Y P+ D++V+LEIKKKV +V KRR T L EAY G
Sbjct: 69 PRYKEKLRLRSYGV-PSLDAKVYLEIKKKVNGLVNKRR--TKLTLREAYEFAATGIKPKY 125
Query: 120 -QTDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSL 178
+ Q+ EI+++++ Y ++P +Y+ Y+R + GI + ++RIT D ++ R L L
Sbjct: 126 QSYMNKQVLNEIEYILSVYD-LEPKLYLAYDRIAYFGINNRDLRITFDTNIRSRRTDLRL 184
Query: 179 LDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKK 230
G +G+ LL EG +ME+K + +WLS +L + +F SFSKYG YKK
Sbjct: 185 ELGDYGEPLLDEGVWLMEVKAEKSISVWLSRMLSENGLFKTSFSKYGTEYKK 236
>gi|153814041|ref|ZP_01966709.1| hypothetical protein RUMTOR_00249 [Ruminococcus torques ATCC 27756]
gi|145848437|gb|EDK25355.1| hypothetical protein RUMTOR_00249 [Ruminococcus torques ATCC 27756]
Length = 239
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 87/231 (37%), Positives = 136/231 (58%), Gaps = 7/231 (3%)
Query: 6 FKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRESLEKP 65
++ F+R+E KY+++K+ +L + HM DD+ + I N+Y+DT F++IR SLEKP
Sbjct: 3 YQMTFKRYELKYLLNKKEKEEILLAMKPHMKLDDYGRTVIRNIYFDTENFRLIRRSLEKP 62
Query: 66 YFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRGQTD--- 122
+KEKLR+R+Y D VF+EIKKK + +VYKRR+ LL + + R
Sbjct: 63 VYKEKLRIRSYKPVQITDP-VFVEIKKKYKSVVYKRRL---LLPEKTVMESFRTGEPLPV 118
Query: 123 DSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSLLDGK 182
SQI +EI + Y+ +QP +++ Y R + ++ + R+T D ++ YR +SL
Sbjct: 119 CSQIGDEIQYFREYYKNLQPSVFLSYEREAFYSLDGSDFRVTFDENILYRRNDISLGSEI 178
Query: 183 HGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKKTTD 233
+G LL + +MEIK G PLW+SE L H ++ SFSKYG AY++ +
Sbjct: 179 YGHPLLGKQQTLMEIKTSGGIPLWMSETLTKHHLYKTSFSKYGSAYQRMME 229
>gi|150389769|ref|YP_001319818.1| hypothetical protein Amet_1996 [Alkaliphilus metalliredigens QYMF]
gi|149949631|gb|ABR48159.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
Length = 262
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 84/232 (36%), Positives = 134/232 (57%), Gaps = 10/232 (4%)
Query: 7 KDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYS----TISNLYYDTPTFQMIRESL 62
K+ F R E KY+++++ L + +M D++ + TI NLYYDT +IR SL
Sbjct: 3 KEVFNRHENKYLMNRDSYEKLQEKLLYYMDIDEYNKTNEMYTICNLYYDTKDDHLIRTSL 62
Query: 63 EKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAY----LAGNR 118
KP +KEKLR+R Y P ED +V+LEIKKKV +V KRR + L A + + R
Sbjct: 63 SKPKYKEKLRIRAYGV-PKEDEEVYLEIKKKVYGLVNKRRTTIKLEEAYDFATTGIKPER 121
Query: 119 GQTDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSL 178
+ + Q+ E++++ Y ++P +Y+ Y+R + + ++RIT D ++ R L+L
Sbjct: 122 KEYMNKQVMNELEYMFKVYD-LEPKLYLAYDRKAFFSKINRDLRITFDTNIRTRRYDLAL 180
Query: 179 LDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKK 230
G +G+ LL E +ME+K + P+WLS +L ++++ SFSKYG YKK
Sbjct: 181 ESGDYGESLLEENQWLMEVKAEKSIPIWLSRLLSENKIYKISFSKYGAEYKK 232
>gi|150388149|ref|YP_001318198.1| hypothetical protein Amet_0308 [Alkaliphilus metalliredigens QYMF]
gi|149948011|gb|ABR46539.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
Length = 248
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 71/236 (30%), Positives = 120/236 (50%), Gaps = 13/236 (5%)
Query: 7 KDKFQRFETKYVIS----KEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRESL 62
++ F R+E KYVI+ K+VL L E D + I +LYYD+ E++
Sbjct: 3 QEVFNRYEFKYVINMNQYKQVLKALKGRIEVDGNGDPDGFYKILSLYYDSDADTFFHETI 62
Query: 63 EKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYL-------A 115
+ F++KLR+R Y+ ED VFLE+K+K +V KRR + A +L A
Sbjct: 63 DGTTFRQKLRLRAYNHVTMEDD-VFLEVKQKHNGVVNKRRTQMRVKDAYDFLKLGVDQKA 121
Query: 116 GNRGQTDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEA 175
+ + + QI EI +L + + P + + Y+R + +GIE+ ++R+T D +L +
Sbjct: 122 LQQYASSNKQILNEIHFL-KEFHLLTPKILVSYDRQAFQGIEEKDLRVTFDTNLRKQEFD 180
Query: 176 LSLLDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKKT 231
L + G + + ++E+KV PLWLS L + +S SKY + Y+++
Sbjct: 181 LRIDGANLGTQFMGSDVSVLEVKVNDRIPLWLSRTLNECGCYRQSVSKYCIGYQQS 236
>gi|157075662|gb|ABV10345.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
substr. CH1]
Length = 116
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 72/105 (68%)
Query: 129 EIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRSEALSLLDGKHGDKLL 188
E++ L RY ++P M I Y+RYSMKG+ED VR+T+D ++ YR + L G++G LL
Sbjct: 4 EVEALQERYLDLKPKMVIGYDRYSMKGLEDKKVRVTVDSNIRYRDYDVELTSGRYGWPLL 63
Query: 189 PEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKKTTD 233
+G VIMEIKVPG YP W+++IL + +SFSKYG AY +T +
Sbjct: 64 EDGKVIMEIKVPGQYPQWMADILNKFGLIDQSFSKYGKAYLQTRE 108
>gi|20091046|ref|NP_617121.1| hypothetical protein MA2205 [Methanosarcina acetivorans C2A]
gi|19916138|gb|AAM05601.1| predicted protein [Methanosarcina acetivorans C2A]
Length = 288
Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 11/226 (4%)
Query: 9 KFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYST----ISNLYYDTPTFQMIRESLEK 64
KF RFE KY+++ + L + + +++ D +++++ I++LYYD+P Q E +
Sbjct: 47 KFNRFELKYLLTIKQANELKEQVKHYLIPDPYSWASGDYVITSLYYDSPDLQCYWEKVNG 106
Query: 65 PYFKEKLRVRTYD--EHPAEDSQVFLEIKKKVRKIVYKRRIST---DLLAAEAYLAGNRG 119
F++KLR+R Y+ E EDS +F+E+K++ K + KRR+ D L
Sbjct: 107 IKFRKKLRIRFYETKEKLTEDSLIFVEVKQRYDKTIQKRRVEMKYKDSLTLCNERIIPEH 166
Query: 120 QTDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIE-DPNVRITIDYDLTYRSEALSL 178
+D+ + EEI M + +QP + Y R++ G + D +RIT D ++ YR L L
Sbjct: 167 NEEDTPVIEEI-LAMVEERNLQPTLITSYFRHAFVGTDYDIGLRITFDSNIRYRINDLDL 225
Query: 179 LDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKY 224
K G ++ VI+EIK P WL+E++ + SKY
Sbjct: 226 NSKKPGRFIVSPDRVILEIKANERVPFWLTELIAQNNYRLVRISKY 271
>gi|157075873|gb|ABV10556.1| conserved hypothetical protein [Streptococcus gordonii str.
Challis substr. CH1]
Length = 99
Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 66/97 (68%)
Query: 1 MAKKTFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRE 60
M +K + FQR ETKY++ + L L E +++ DD+A STI+N+Y+D FQMI++
Sbjct: 1 MKQKKIQTNFQRIETKYILDRGTLERLEAEMAPYLIADDYARSTITNIYFDNDDFQMIQD 60
Query: 61 SLEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKI 97
S+ + +EKLR+RTY E P +D QVFLEIKKK ++
Sbjct: 61 SIARKGGREKLRMRTYAEQPTDDCQVFLEIKKKSEEV 97
>gi|118468894|ref|YP_890155.1| hypothetical protein MSMEG_5929 [Mycobacterium smegmatis str. MC2
155]
gi|118170181|gb|ABK71077.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 299
Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 10/224 (4%)
Query: 10 FQRFETKYVISKEVLANLLTEFEEHMVEDD---HAYSTISNLYYDTPTFQMIRESLEKPY 66
F R+E KY + + + L E HM D H +++LYYDTP + E +E
Sbjct: 36 FNRYEIKYFVDELRVPELRDELAAHMDTDPYSPHGGYPVTSLYYDTPDLRFYWEKIEGLR 95
Query: 67 FKEKLRVRTYDEHPA--EDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRG-QTDD 123
F+ KLR+R Y A +D+ V +EIK++V ++ KRR A +L + D
Sbjct: 96 FRRKLRMRLYGAPSACTDDTPVQIEIKQRVNRVTQKRRTELPYATAVQWLDHRKEIDCDA 155
Query: 124 SQ--ICEEIDWLMARYQKVQPMMYIYYNRYSMKGIE-DPNVRITIDYDLTYRSEALSLLD 180
SQ E+ L+ ++P++ Y R + G + D +R+TID+ + R
Sbjct: 156 SQKPFVNEVTTLVENLD-LRPIVTTGYLREAFVGRDADLGLRVTIDHKVHGRDRDFHFAS 214
Query: 181 GKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKY 224
G ++P I+E+K P W++++L + SKY
Sbjct: 215 GAQNRFIIPPKLAIVEVKANERVPYWITDLLARVDMSVIRVSKY 258
>gi|19551308|ref|NP_599310.1| hypothetical protein NCgl0057 [Corynebacterium glutamicum ATCC
13032]
gi|62388953|ref|YP_224355.1| hypothetical protein cg0077 [Corynebacterium glutamicum ATCC 13032]
gi|21322822|dbj|BAB97451.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
gi|41324286|emb|CAF18626.1| Conserved HYPOTHETICAL PROTEIN [Corynebacterium glutamicum ATCC
13032]
Length = 280
Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 59/240 (24%), Positives = 110/240 (45%), Gaps = 29/240 (12%)
Query: 9 KFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYS---TISNLYYDTPTFQMIRESLEKP 65
+F RFE KY+I+++ + L + M D + + +LY+D+ + E +E
Sbjct: 24 RFNRFEIKYLITEQDVPALREQLATRMSTDPLSPPGGYRVESLYFDSADLRCYTEKIEGL 83
Query: 66 YFKEKLRVRTY-DEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRGQTDDS 124
F+ KLR+RTY D +S V +EIK++V K+ KRR+ + A A G + +
Sbjct: 84 KFRRKLRIRTYGDGVLTPESTVSVEIKQRVNKVTQKRRLDLPFIYALAL-----GDSTGA 138
Query: 125 QICEEID-------------------WLMARYQKVQPMMYIYYNRYSMKGIE-DPNVRIT 164
+ E++D A+ +++P+ Y+R + G + + + R+T
Sbjct: 139 AVGEQVDVEKLLEISPENQHALIHEMASFAKNYRLRPIATTKYHREAFVGADAEESSRVT 198
Query: 165 IDYDLTYRSEALSLLDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKY 224
ID+ ++ R L + +G ++EIK P WL+++ ++ SKY
Sbjct: 199 IDHGVSGRDRDFLLGQDLEDRPTVAQGLAVVEIKCDERVPFWLTDMTAQLEMSVIRMSKY 258
>gi|145294119|ref|YP_001136940.1| hypothetical protein cgR_0077 [Corynebacterium glutamicum R]
gi|140844039|dbj|BAF53038.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 280
Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 59/240 (24%), Positives = 109/240 (45%), Gaps = 29/240 (12%)
Query: 9 KFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYS---TISNLYYDTPTFQMIRESLEKP 65
+F RFE KY+I ++ + L + M D + + +LY+D+ + E +E
Sbjct: 24 RFNRFEIKYLIPEQDVPALREQLATRMSTDPLSPPGGYRVESLYFDSADLRCYTEKIEGL 83
Query: 66 YFKEKLRVRTY-DEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRGQTDDS 124
F+ KLR+RTY D +S V +EIK++V K+ KRR+ + A A G + +
Sbjct: 84 KFRRKLRIRTYGDGVLTPESTVSVEIKQRVNKVTQKRRLDLPFIYALAL-----GDSTGA 138
Query: 125 QICEEID-------------------WLMARYQKVQPMMYIYYNRYSMKGIE-DPNVRIT 164
+ E++D A+ +++P+ Y+R + G + + + R+T
Sbjct: 139 AVGEQVDVEKLLEISPENQHALIHEMASFAKNYRLRPIATTKYHREAFVGADAEASSRVT 198
Query: 165 IDYDLTYRSEALSLLDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKY 224
ID+ ++ R L + +G ++EIK P WL+++ ++ SKY
Sbjct: 199 IDHGVSGRDRDFLLGQDLEDRPTVAQGLAVVEIKCDERVPFWLTDMTAQLEMSVIRMSKY 258
>gi|42522397|ref|NP_967777.1| hypothetical protein Bd0821 [Bdellovibrio bacteriovorus HD100]
gi|39574929|emb|CAE78770.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 261
Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 30/239 (12%)
Query: 10 FQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTIS--------NLYYDTPTFQMIRES 61
+R+E KY+I L ++ F E E D+ YST+S +LY DTP+ ++R
Sbjct: 10 LERYELKYLIPAS-LVEPISRFVETYCEMDY-YSTVSPDKHYTINSLYLDTPSLYLLRFK 67
Query: 62 LEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRIS------TDLLAAEAYLA 115
+ +R+R+Y ++P F EIK K+R+ V K+R D+L A A
Sbjct: 68 ESANAYSFNMRIRSYGDNP--KPPYFFEIKYKLREFVRKKRALVHDENWADILEWGAIPA 125
Query: 116 GNRGQTDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTY---- 171
+G + + EE + Y V P++ Y R + + D R+T D DL Y
Sbjct: 126 HIQGSSRGN--LEEFLRVKMTYN-VGPVILTQYRRKAYLSVVDDYARVTFDRDLRYQEMN 182
Query: 172 ----RSEALSLLDGKHGDKLLPEG-YVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYG 225
R A L H D G V++E+K P W+ +++ ++ SFSK+G
Sbjct: 183 EWCVRPNAHLLSHYDHPDSFEEPGCNVVLELKCEKKIPYWMVDLIRRFELESGSFSKFG 241
>gi|91201424|emb|CAJ74484.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]
Length = 254
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 36/241 (14%)
Query: 11 QRFETKYVISKEVL------ANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRESLEK 64
+R+E ++VI KE++ A++ +++ D+ + I+NL++DTP + + + L+K
Sbjct: 11 RRYELEFVIPKEMIEPISRFASIYCSPDKYSSNADNGFYCINNLHFDTPDYLFLMQRLDK 70
Query: 65 PYFKEKLRVRTYDEHPAEDSQVFLEIKKKVRKIVYKRRISTDLLAAEAYLAGNRGQTD-- 122
+ LR+R+Y ++ + FLE+K+K IV K R A Y R +
Sbjct: 71 CNRRLHLRIRSYPN--SKKYRCFLEVKEKTGDIVNKYR-------APLYDENWRRMFEDL 121
Query: 123 DSQICEEIDW----------LMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYR 172
D +CEE D+ A + P M Y R + R+T D L Y+
Sbjct: 122 DYSLCEEKDFDPNSSKTHFLKTAYFYNATPKMLSQYWRKVYVSNVNEYARVTFDTGLRYQ 181
Query: 173 -SEALSLLDGKH-----GDKLL--PEGYVIMEIKV-PGAYPLWLSEILGHHQVFPKSFSK 223
+E ++ ++ D+ L PE VI+E+K PLW+ +++ H + + FSK
Sbjct: 182 PAEGYCIIPDENKMVSLDDETLFAPECNVILELKCYTMQVPLWMIDLIRHFNLQRRGFSK 241
Query: 224 Y 224
Y
Sbjct: 242 Y 242
>gi|106886531|ref|ZP_01353869.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]
gi|106766004|gb|EAT22745.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]
Length = 224
Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 10/198 (5%)
Query: 32 EEHMVEDDHAYSTISNLYYDTPTFQMIRESLEKPYFKEKLRVRTYDEHPAEDSQVFLEIK 91
+E+++ED I +LY+D T + + E L +EK R+R Y++ + S + LE K
Sbjct: 32 DENVLED--GGYKIRSLYFDNYTDKAVVEKLSGQSKREKFRLRYYND---DTSFIRLERK 86
Query: 92 KKVRKIVYKRRISTDLLAAEAYLAGNRG--QTDDSQICEEIDWLMARYQKVQPMMYIYYN 149
K ++ YK E+ L GN + DS + E+ + RYQ ++P + Y
Sbjct: 87 SKANRLCYKESAVITAEQCESLLLGNYDCLKLPDSPLLMEL-YTKIRYQNLRPKNIVDYR 145
Query: 150 RYSMKGIEDPNVRITIDYDLTYRSEALSLLDGKHGDKLLPEGYVIMEIKVPGAYPLWLSE 209
R + NVRIT D ++ + + L+ + +IMEIK G P + +
Sbjct: 146 REAYT-YHAGNVRITFDSNIRTSNSVVGFLNPAL-TTIPAANAIIMEIKYDGFLPDIIRD 203
Query: 210 ILGHHQVFPKSFSKYGVA 227
IL FSKY VA
Sbjct: 204 ILQIGSRNQTEFSKYVVA 221
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.319 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 903,180,045
Number of Sequences: 5470121
Number of extensions: 36893714
Number of successful extensions: 86063
Number of sequences better than 1.0e-05: 26
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 86007
Number of HSP's gapped (non-prelim): 26
length of query: 245
length of database: 1,894,087,724
effective HSP length: 129
effective length of query: 116
effective length of database: 1,188,442,115
effective search space: 137859285340
effective search space used: 137859285340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)